Interactions for 2RA4 (chain A)
Structure details
- PDB ID: 2RA4 open_in_new
- Protein: CCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: Q99616 open_in_new
- Method: X-ray
- Resolution: 1.7 Å
- Date: March 18, 2008
- Reference: 10.1107/S0907444907066164 open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Asp 3 | 55 | N-term | LYS 18 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Ala 4 | 56 | N-term | LYS 18 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Ala 4 | 56 | N-term | LYS 18 | Small-inducible cytokine A13 (B) | VdWContact |
| Ala 4 | 56 | N-term | SER 17 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Ala 4 | 56 | N-term | SER 17 | Small-inducible cytokine A13 (B) | HBDonor |
| Ala 4 | 56 | N-term | SER 17 | Small-inducible cytokine A13 (B) | VdWContact |
| Leu 5 | 57 | N-term | LYS 18 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Leu 5 | 57 | N-term | LYS 18 | Small-inducible cytokine A13 (B) | VdWContact |
| Leu 5 | 57 | N-term | ILE 50 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Leu 5 | 57 | N-term | ILE 50 | Small-inducible cytokine A13 (B) | VdWContact |
| Leu 5 | 57 | N-term | ILE 20 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Asn 6 | 58 | N-term | THR 14 | Small-inducible cytokine A13 (B) | VdWContact |
| Asn 6 | 58 | N-term | CYS 51 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Asn 6 | 58 | N-term | CYS 51 | Small-inducible cytokine A13 (B) | VdWContact |
| Asn 6 | 58 | N-term | SER 16 | Small-inducible cytokine A13 (B) | HBDonor |
| Asn 6 | 58 | N-term | SER 16 | Small-inducible cytokine A13 (B) | VdWContact |
| Val 7 | 59 | N-term | CYS 51 | Small-inducible cytokine A13 (B) | VdWContact |
| Val 7 | 59 | N-term | GLU 49 | Small-inducible cytokine A13 (B) | VdWContact |
| Pro 8 | 60 | N-term | ILE 41 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Pro 8 | 60 | N-term | THR 10 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Pro 8 | 60 | N-term | THR 10 | Small-inducible cytokine A13 (B) | VdWContact |
| Pro 8 | 60 | N-term | CYS 51 | Small-inducible cytokine A13 (B) | VdWContact |
| Pro 8 | 60 | N-term | GLU 49 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Ser 9 | 61 | N-term | CYS 11 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Ser 9 | 61 | N-term | CYS 11 | Small-inducible cytokine A13 (B) | HBDonor |
| Ser 9 | 61 | N-term | CYS 11 | Small-inducible cytokine A13 (B) | VdWContact |
| Ser 9 | 61 | N-term | THR 10 | Small-inducible cytokine A13 (B) | VdWContact |
| Ser 9 | 61 | N-term | PHE 13 | Small-inducible cytokine A13 (B) | VdWContact |
| Thr 10 | 62 | N-term | PRO 8 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Thr 10 | 62 | N-term | PRO 8 | Small-inducible cytokine A13 (B) | VdWContact |
| Thr 10 | 62 | N-term | SER 9 | Small-inducible cytokine A13 (B) | VdWContact |
| Cys 11 | 63 | CX | SER 9 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Cys 11 | 63 | CX | SER 9 | Small-inducible cytokine A13 (B) | HBDonor |
| Cys 11 | 63 | CX | SER 9 | Small-inducible cytokine A13 (B) | VdWContact |
| Phe 13 | 68 | N-loop | SER 9 | Small-inducible cytokine A13 (B) | VdWContact |
| Phe 13 | 68 | N-loop | ARG 34 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Thr 14 | 69 | N-loop | ASN 6 | Small-inducible cytokine A13 (B) | HBDonor |
| Thr 14 | 69 | N-loop | ASN 6 | Small-inducible cytokine A13 (B) | VdWContact |
| Ser 16 | 71 | N-loop | ASN 6 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Ser 16 | 71 | N-loop | ASN 6 | Small-inducible cytokine A13 (B) | VdWContact |
| Ser 17 | 72 | N-loop | ALA 4 | Small-inducible cytokine A13 (B) | HBAcceptor |
| Ser 17 | 72 | N-loop | ALA 4 | Small-inducible cytokine A13 (B) | HBDonor |
| Ser 17 | 72 | N-loop | ALA 4 | Small-inducible cytokine A13 (B) | VdWContact |
| Lys 18 | 73 | N-loop | ASP 3 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Lys 18 | 73 | N-loop | ALA 4 | Small-inducible cytokine A13 (B) | HBDonor |
| Lys 18 | 73 | N-loop | ALA 4 | Small-inducible cytokine A13 (B) | VdWContact |
| Lys 18 | 73 | N-loop | LEU 5 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Lys 18 | 73 | N-loop | LEU 5 | Small-inducible cytokine A13 (B) | VdWContact |
| Ile 20 | 75 | N-loop | LEU 5 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Arg 34 | 94 | 30s-loop | PHE 13 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Arg 34 | 94 | 30s-loop | PHE 13 | Small-inducible cytokine A13 (B) | VdWContact |
| Pro 36 | 96 | 30s-loop | PRO 36 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Ile 41 | 102 | B2 | PRO 8 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Lys 48 | 114 | 40s-loop | LEU 5 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Glu 49 | 115 | B3 | PRO 8 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Glu 49 | 115 | B3 | VAL 7 | Small-inducible cytokine A13 (B) | VdWContact |
| Ile 50 | 116 | B3 | LEU 5 | Small-inducible cytokine A13 (B) | Hydrophobic |
| Ile 50 | 116 | B3 | LEU 5 | Small-inducible cytokine A13 (B) | VdWContact |
| Cys 51 | 117 | B3 | ASN 6 | Small-inducible cytokine A13 (B) | HBDonor |
| Cys 51 | 117 | B3 | ASN 6 | Small-inducible cytokine A13 (B) | VdWContact |
| Cys 51 | 117 | B3 | PRO 8 | Small-inducible cytokine A13 (B) | VdWContact |
Ligand interaction network
SO4_A_76
SO4_A_77
SO4_A_78
SO4_B_76
SO4_B_77
SO4_B_78
TFA_B_79
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