Interactions for 5CBA (chain F)
Structure details
- PDB ID: 5CBA open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.5 Å
- Date: Nov. 4, 2015
- Reference: 10.1074/JBC.M115.688010 open_in_new
- State: monomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Phe 18 | 74 | N-loop | PHE 54 | 3b4 heavy chain (C) | Hydrophobic |
| Arg 21 | 80 | N-loop | ASP 97 | 3b4 heavy chain (C) | Cationic |
| Arg 21 | 80 | N-loop | ASP 97 | 3b4 heavy chain (C) | VdWContact |
| Arg 21 | 80 | N-loop | PRO 96 | 3b4 heavy chain (C) | HBDonor |
| Arg 21 | 80 | N-loop | PRO 96 | 3b4 heavy chain (C) | VdWContact |
| Arg 21 | 80 | N-loop | PRO 100 | 3b4 heavy chain (C) | Hydrophobic |
| Arg 21 | 80 | N-loop | ILE 52 | 3b4 heavy chain (C) | Hydrophobic |
| Arg 21 | 80 | N-loop | SER 31 | 3b4 heavy chain (C) | HBDonor |
| Arg 21 | 80 | N-loop | SER 31 | 3b4 heavy chain (C) | VdWContact |
| Arg 21 | 80 | N-loop | TYR 32 | 3b4 heavy chain (C) | VdWContact |
| Arg 22 | 81 | N-loop | ARG 93 | 3b4 light chain (D) | HBDonor |
| Arg 22 | 81 | N-loop | ARG 93 | 3b4 light chain (D) | VdWContact |
| Arg 22 | 81 | N-loop | TYR 91 | 3b4 light chain (D) | Hydrophobic |
| Arg 22 | 81 | N-loop | TYR 91 | 3b4 light chain (D) | VdWContact |
| Arg 22 | 81 | N-loop | ASP 95 | 3b4 light chain (D) | Cationic |
| Ile 24 | 83 | B1 | PRO 100 | 3b4 heavy chain (C) | Hydrophobic |
| Asp 25 | 84 | B1 | TYR 30 | 3b4 light chain (D) | HBDonor |
| Asp 25 | 84 | B1 | TYR 30 | 3b4 light chain (D) | VdWContact |
| Arg 26 | 85 | B1 | SER 100 | 3b4 heavy chain (C) | HBDonor |
| Arg 26 | 85 | B1 | SER 100 | 3b4 heavy chain (C) | VdWContact |
| Arg 26 | 85 | B1 | TYR 100 | 3b4 heavy chain (C) | Hydrophobic |
| Arg 26 | 85 | B1 | TYR 100 | 3b4 heavy chain (C) | VdWContact |
| Ile 27 | 86 | B1 | TYR 100 | 3b4 heavy chain (C) | Hydrophobic |
| Ile 27 | 86 | B1 | TYR 100 | 3b4 heavy chain (C) | HBAcceptor |
| Ile 27 | 86 | B1 | TYR 100 | 3b4 heavy chain (C) | HBDonor |
| Ile 27 | 86 | B1 | TYR 100 | 3b4 heavy chain (C) | VdWContact |
| Ile 29 | 88 | B1 | TYR 99 | 3b4 heavy chain (C) | Hydrophobic |
| Lys 46 | 106 | 40s-loop | TYR 30 | 3b4 light chain (D) | Hydrophobic |
| Lys 46 | 106 | 40s-loop | TYR 30 | 3b4 light chain (D) | VdWContact |
| Lys 46 | 106 | 40s-loop | ASP 100 | 3b4 heavy chain (C) | Cationic |
| Lys 46 | 106 | 40s-loop | TRP 32 | 3b4 light chain (D) | Hydrophobic |
| Lys 46 | 106 | 40s-loop | TRP 32 | 3b4 light chain (D) | VdWContact |
| Trp 59 | 124 | Helix | PHE 54 | 3b4 heavy chain (C) | Hydrophobic |
| Trp 59 | 124 | Helix | PHE 54 | 3b4 heavy chain (C) | VdWContact |
| Arg 62 | 127 | Helix | ILE 53 | 3b4 heavy chain (C) | Hydrophobic |
| Arg 62 | 127 | Helix | GLU 73 | 3b4 heavy chain (C) | HBDonor |
| Arg 62 | 127 | Helix | GLU 73 | 3b4 heavy chain (C) | Cationic |
| Arg 62 | 127 | Helix | GLU 73 | 3b4 heavy chain (C) | VdWContact |
| Met 63 | 128 | Helix | PHE 54 | 3b4 heavy chain (C) | Hydrophobic |
| Met 63 | 128 | Helix | TYR 100 | 3b4 heavy chain (C) | Hydrophobic |
| Val 66 | 131 | Helix | ILE 53 | 3b4 heavy chain (C) | Hydrophobic |
| Val 66 | 131 | Helix | ILE 53 | 3b4 heavy chain (C) | VdWContact |
| Leu 67 | 132 | Helix | TYR 99 | 3b4 heavy chain (C) | Hydrophobic |
| Leu 67 | 132 | Helix | TYR 100 | 3b4 heavy chain (C) | Hydrophobic |
Ligand interaction network
EDO_A_201
PEG_A_202
EDO_B_201
EDO_C_201
EDO_E_101
Interaction pattern search
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