Interactions for 5CBE (chain E)


Structure details

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Chemokine diagram

P R G N G C P R K E 30s-loop K N K S 40s-loop D P Q A 50s-loopN-term M K F I S T S L L L M L L V S S L S P V Q G V L E V Y Y T S L R C R C V Q E S S V F I P R R F N-termC-term S S S T L P V P V F K R K I P C-term L I Q I R D I I I V W K V C V I E W I Q R M M E V L R K R
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Interactions found in structure

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Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Tyr 3 57 N-term LYS 48 C-X-C motif chemokine 13 (F) Hydrophobic
Tyr 4 58 N-term SER 49 C-X-C motif chemokine 13 (F) VdWContact
Tyr 4 58 N-term ILE 50 C-X-C motif chemokine 13 (F) HBAcceptor
Tyr 4 58 N-term ILE 50 C-X-C motif chemokine 13 (F) VdWContact
Tyr 4 58 N-term VAL 51 C-X-C motif chemokine 13 (F) Hydrophobic
Thr 5 59 N-term ILE 50 C-X-C motif chemokine 13 (F) Hydrophobic
Thr 5 59 N-term ILE 50 C-X-C motif chemokine 13 (F) VdWContact
Ser 6 60 N-term CYS 11 C-X-C motif chemokine 13 (F) VdWContact
Ser 6 60 N-term VAL 12 C-X-C motif chemokine 13 (F) HBAcceptor
Ser 6 60 N-term VAL 12 C-X-C motif chemokine 13 (F) VdWContact
Ser 6 60 N-term ILE 50 C-X-C motif chemokine 13 (F) HBDonor
Ser 6 60 N-term ILE 50 C-X-C motif chemokine 13 (F) VdWContact
Leu 7 61 N-term ARG 10 C-X-C motif chemokine 13 (F) Hydrophobic
Leu 7 61 N-term ARG 10 C-X-C motif chemokine 13 (F) VdWContact
Leu 7 61 N-term ILE 42 C-X-C motif chemokine 13 (F) Hydrophobic
Leu 7 61 N-term ILE 50 C-X-C motif chemokine 13 (F) Hydrophobic
Arg 8 62 N-term CYS 9 C-X-C motif chemokine 13 (F) HBDonor
Arg 8 62 N-term CYS 9 C-X-C motif chemokine 13 (F) VdWContact
Arg 8 62 N-term ARG 8 C-X-C motif chemokine 13 (F) VdWContact
Arg 8 62 N-term ARG 10 C-X-C motif chemokine 13 (F) HBDonor
Arg 8 62 N-term ARG 10 C-X-C motif chemokine 13 (F) VdWContact
Arg 8 62 N-term VAL 12 C-X-C motif chemokine 13 (F) Hydrophobic
Arg 8 62 N-term VAL 12 C-X-C motif chemokine 13 (F) VdWContact
Cys 9 63 CX ARG 8 C-X-C motif chemokine 13 (F) HBAcceptor
Cys 9 63 CX ARG 8 C-X-C motif chemokine 13 (F) VdWContact
Arg 10 66 CX ARG 8 C-X-C motif chemokine 13 (F) HBAcceptor
Arg 10 66 CX ARG 8 C-X-C motif chemokine 13 (F) HBDonor
Arg 10 66 CX ARG 8 C-X-C motif chemokine 13 (F) VdWContact
Arg 10 66 CX ARG 10 C-X-C motif chemokine 13 (F) Hydrophobic
Arg 10 66 CX LEU 30 C-X-C motif chemokine 13 (F) VdWContact
Arg 10 66 CX GLU 40 C-X-C motif chemokine 13 (F) Cationic
Arg 10 66 CX LEU 7 C-X-C motif chemokine 13 (F) Hydrophobic
Arg 10 66 CX LEU 7 C-X-C motif chemokine 13 (F) VdWContact
Arg 10 66 CX CYS 36 C-X-C motif chemokine 13 (F) Cationic
Val 12 68 N-loop ARG 8 C-X-C motif chemokine 13 (F) Hydrophobic
Phe 18 74 N-loop PHE 54 E10 heavy chain (A) Hydrophobic
Phe 18 74 N-loop PHE 54 E10 heavy chain (A) VdWContact
Phe 18 74 N-loop THR 56 E10 heavy chain (A) Hydrophobic
Ile 19 75 N-loop PHE 54 E10 heavy chain (A) VdWContact
Arg 21 80 N-loop ILE 100 E10 heavy chain (A) HBDonor
Arg 21 80 N-loop ILE 100 E10 heavy chain (A) VdWContact
Arg 21 80 N-loop ASP 97 E10 heavy chain (A) HBDonor
Arg 21 80 N-loop ASP 97 E10 heavy chain (A) Cationic
Arg 21 80 N-loop ASP 97 E10 heavy chain (A) VdWContact
Arg 21 80 N-loop PHE 54 E10 heavy chain (A) Hydrophobic
Arg 21 80 N-loop PRO 96 E10 heavy chain (A) VdWContact
Arg 21 80 N-loop PRO 100 E10 heavy chain (A) Hydrophobic
Arg 21 80 N-loop GLU 95 E10 heavy chain (A) Cationic
Arg 21 80 N-loop GLU 95 E10 heavy chain (A) VdWContact
Arg 21 80 N-loop ILE 52 E10 heavy chain (A) Hydrophobic
Arg 22 81 N-loop TYR 96 E10 light chain (B) VdWContact
Arg 22 81 N-loop ASP 95 E10 light chain (B) Cationic
Arg 22 81 N-loop ASP 95 E10 light chain (B) VdWContact
Arg 22 81 N-loop GLU 95 E10 heavy chain (A) HBDonor
Arg 22 81 N-loop GLU 95 E10 heavy chain (A) Cationic
Arg 22 81 N-loop GLU 95 E10 heavy chain (A) VdWContact
Arg 22 81 N-loop ASP 100 E10 heavy chain (A) HBAcceptor
Arg 22 81 N-loop ASP 100 E10 heavy chain (A) VdWContact
Phe 23 82 N-loop TYR 30 E10 light chain (B) Hydrophobic
Phe 23 82 N-loop ASP 95 E10 light chain (B) Hydrophobic
Phe 23 82 N-loop TRP 32 E10 light chain (B) Hydrophobic
Phe 23 82 N-loop TRP 32 E10 light chain (B) VdWContact
Phe 23 82 N-loop LEU 93 E10 light chain (B) VdWContact
Ile 24 83 B1 PHE 54 E10 heavy chain (A) Hydrophobic
Ile 24 83 B1 PRO 100 E10 heavy chain (A) Hydrophobic
Arg 26 85 B1 SER 100 E10 heavy chain (A) HBDonor
Arg 26 85 B1 SER 100 E10 heavy chain (A) VdWContact
Arg 26 85 B1 TYR 100 E10 heavy chain (A) Hydrophobic
Arg 26 85 B1 TYR 100 E10 heavy chain (A) VdWContact
Ile 27 86 B1 TYR 100 E10 heavy chain (A) Hydrophobic
Ile 27 86 B1 TYR 100 E10 heavy chain (A) HBAcceptor
Ile 27 86 B1 TYR 100 E10 heavy chain (A) HBDonor
Ile 27 86 B1 TYR 100 E10 heavy chain (A) VdWContact
Gln 28 87 B1 SER 100 E10 heavy chain (A) VdWContact
Leu 30 89 B1 ARG 10 C-X-C motif chemokine 13 (F) VdWContact
Ile 42 102 B2 LEU 7 C-X-C motif chemokine 13 (F) Hydrophobic
Lys 46 106 40s-loop TYR 30 E10 light chain (B) Hydrophobic
Lys 46 106 40s-loop TRP 32 E10 light chain (B) Hydrophobic
Lys 46 106 40s-loop ASP 100 E10 heavy chain (A) VdWContact
Asn 47 112 40s-loop TYR 30 E10 light chain (B) Hydrophobic
Asn 47 112 40s-loop TYR 30 E10 light chain (B) VdWContact
Ile 50 115 B3 LEU 7 C-X-C motif chemokine 13 (F) Hydrophobic
Ile 50 115 B3 THR 5 C-X-C motif chemokine 13 (F) Hydrophobic
Ile 50 115 B3 THR 5 C-X-C motif chemokine 13 (F) VdWContact
Trp 59 124 Helix PHE 54 E10 heavy chain (A) Hydrophobic
Arg 62 127 Helix GLU 73 E10 heavy chain (A) Cationic
Met 63 128 Helix ILE 53 E10 heavy chain (A) Hydrophobic
Met 63 128 Helix PHE 54 E10 heavy chain (A) Hydrophobic

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