Interactions for 5CBE (chain F)


Structure details

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Chemokine diagram

P R G N G C P R K E 30s-loop K N K S 40s-loop D P Q A 50s-loopN-term M K F I S T S L L L M L L V S S L S P V Q G V L E V Y Y T S L R C R C V Q E S S V F I P R R F N-termC-term S S S T L P V P V F K R K I P C-term L I Q I R D I I I V W K V C V I E W I Q R M M E V L R K R
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Interactions found in structure

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Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Thr 5 59 N-term ILE 50 C-X-C motif chemokine 13 (E) Hydrophobic
Thr 5 59 N-term ILE 50 C-X-C motif chemokine 13 (E) VdWContact
Leu 7 61 N-term ARG 10 C-X-C motif chemokine 13 (E) Hydrophobic
Leu 7 61 N-term ARG 10 C-X-C motif chemokine 13 (E) VdWContact
Leu 7 61 N-term ILE 42 C-X-C motif chemokine 13 (E) Hydrophobic
Leu 7 61 N-term ILE 50 C-X-C motif chemokine 13 (E) Hydrophobic
Arg 8 62 N-term ARG 10 C-X-C motif chemokine 13 (E) HBAcceptor
Arg 8 62 N-term ARG 10 C-X-C motif chemokine 13 (E) HBDonor
Arg 8 62 N-term ARG 10 C-X-C motif chemokine 13 (E) VdWContact
Arg 8 62 N-term CYS 9 C-X-C motif chemokine 13 (E) HBDonor
Arg 8 62 N-term CYS 9 C-X-C motif chemokine 13 (E) VdWContact
Arg 8 62 N-term ARG 8 C-X-C motif chemokine 13 (E) VdWContact
Arg 8 62 N-term VAL 12 C-X-C motif chemokine 13 (E) Hydrophobic
Cys 9 63 CX ARG 8 C-X-C motif chemokine 13 (E) HBAcceptor
Cys 9 63 CX ARG 8 C-X-C motif chemokine 13 (E) VdWContact
Arg 10 66 CX ARG 10 C-X-C motif chemokine 13 (E) Hydrophobic
Arg 10 66 CX LEU 7 C-X-C motif chemokine 13 (E) Hydrophobic
Arg 10 66 CX LEU 7 C-X-C motif chemokine 13 (E) VdWContact
Arg 10 66 CX ARG 8 C-X-C motif chemokine 13 (E) HBAcceptor
Arg 10 66 CX ARG 8 C-X-C motif chemokine 13 (E) VdWContact
Arg 10 66 CX LEU 30 C-X-C motif chemokine 13 (E) VdWContact
Cys 11 67 CX SER 6 C-X-C motif chemokine 13 (E) VdWContact
Val 12 68 N-loop ARG 8 C-X-C motif chemokine 13 (E) Hydrophobic
Val 12 68 N-loop ARG 8 C-X-C motif chemokine 13 (E) VdWContact
Val 12 68 N-loop SER 6 C-X-C motif chemokine 13 (E) HBDonor
Val 12 68 N-loop SER 6 C-X-C motif chemokine 13 (E) VdWContact
Phe 18 74 N-loop PHE 54 E10 heavy chain (C) Hydrophobic
Arg 21 80 N-loop PRO 100 E10 heavy chain (C) Hydrophobic
Arg 21 80 N-loop GLU 95 E10 heavy chain (C) Cationic
Arg 21 80 N-loop GLU 95 E10 heavy chain (C) VdWContact
Arg 21 80 N-loop ILE 52 E10 heavy chain (C) Hydrophobic
Arg 21 80 N-loop ILE 100 E10 heavy chain (C) HBDonor
Arg 21 80 N-loop ILE 100 E10 heavy chain (C) VdWContact
Arg 21 80 N-loop ASP 97 E10 heavy chain (C) HBDonor
Arg 21 80 N-loop ASP 97 E10 heavy chain (C) Cationic
Arg 21 80 N-loop ASP 97 E10 heavy chain (C) VdWContact
Arg 21 80 N-loop PRO 96 E10 heavy chain (C) VdWContact
Arg 22 81 N-loop GLU 95 E10 heavy chain (C) Cationic
Arg 22 81 N-loop GLU 95 E10 heavy chain (C) VdWContact
Arg 22 81 N-loop ASP 100 E10 heavy chain (C) HBAcceptor
Arg 22 81 N-loop ASP 100 E10 heavy chain (C) VdWContact
Arg 22 81 N-loop ASP 95 E10 light chain (D) Cationic
Arg 22 81 N-loop ASP 95 E10 light chain (D) VdWContact
Phe 23 82 N-loop LEU 93 E10 light chain (D) VdWContact
Phe 23 82 N-loop ASP 95 E10 light chain (D) Hydrophobic
Phe 23 82 N-loop TRP 32 E10 light chain (D) Hydrophobic
Ile 24 83 B1 PRO 100 E10 heavy chain (C) Hydrophobic
Arg 26 85 B1 TYR 100 E10 heavy chain (C) Hydrophobic
Arg 26 85 B1 TYR 100 E10 heavy chain (C) VdWContact
Arg 26 85 B1 SER 100 E10 heavy chain (C) VdWContact
Ile 27 86 B1 TYR 100 E10 heavy chain (C) Hydrophobic
Ile 27 86 B1 TYR 100 E10 heavy chain (C) HBAcceptor
Ile 27 86 B1 TYR 100 E10 heavy chain (C) HBDonor
Ile 27 86 B1 TYR 100 E10 heavy chain (C) VdWContact
Leu 30 89 B1 ARG 10 C-X-C motif chemokine 13 (E) VdWContact
Cys 36 95 30s-loop ARG 10 C-X-C motif chemokine 13 (E) Anionic
Glu 40 100 30s-loop ARG 10 C-X-C motif chemokine 13 (E) Anionic
Ile 42 102 B2 LEU 7 C-X-C motif chemokine 13 (E) Hydrophobic
Lys 46 106 40s-loop ASP 100 E10 heavy chain (C) HBDonor
Lys 46 106 40s-loop ASP 100 E10 heavy chain (C) VdWContact
Lys 46 106 40s-loop TYR 30 E10 light chain (D) Hydrophobic
Lys 46 106 40s-loop TRP 32 E10 light chain (D) Hydrophobic
Asn 47 112 40s-loop TYR 30 E10 light chain (D) Hydrophobic
Asn 47 112 40s-loop TYR 30 E10 light chain (D) VdWContact
Lys 48 113 40s-loop TYR 3 C-X-C motif chemokine 13 (E) Hydrophobic
Ser 49 114 40s-loop TYR 4 C-X-C motif chemokine 13 (E) VdWContact
Ile 50 115 B3 LEU 7 C-X-C motif chemokine 13 (E) Hydrophobic
Ile 50 115 B3 TYR 4 C-X-C motif chemokine 13 (E) HBDonor
Ile 50 115 B3 TYR 4 C-X-C motif chemokine 13 (E) VdWContact
Ile 50 115 B3 SER 6 C-X-C motif chemokine 13 (E) HBAcceptor
Ile 50 115 B3 SER 6 C-X-C motif chemokine 13 (E) VdWContact
Ile 50 115 B3 THR 5 C-X-C motif chemokine 13 (E) Hydrophobic
Ile 50 115 B3 THR 5 C-X-C motif chemokine 13 (E) VdWContact
Val 51 116 B3 TYR 4 C-X-C motif chemokine 13 (E) Hydrophobic
Trp 59 124 Helix PHE 54 E10 heavy chain (C) Hydrophobic
Trp 59 124 Helix PHE 54 E10 heavy chain (C) VdWContact
Arg 62 127 Helix GLU 73 E10 heavy chain (C) Cationic
Arg 62 127 Helix ILE 53 E10 heavy chain (C) VdWContact
Met 63 128 Helix TYR 100 E10 heavy chain (C) Hydrophobic
Met 63 128 Helix PHE 54 E10 heavy chain (C) Hydrophobic
Met 63 128 Helix PHE 54 E10 heavy chain (C) VdWContact
Val 66 131 Helix SER 31 E10 heavy chain (C) VdWContact
Val 66 131 Helix ILE 53 E10 heavy chain (C) Hydrophobic
Leu 67 132 Helix TYR 99 E10 heavy chain (C) Hydrophobic
Leu 67 132 Helix TYR 100 E10 heavy chain (C) Hydrophobic
Lys 69 134 Helix PHE 29 E10 heavy chain (C) Hydrophobic
Lys 69 134 Helix PHE 29 E10 heavy chain (C) VdWContact
Lys 69 134 Helix TYR 99 E10 heavy chain (C) VdWContact
Arg 70 135 Helix TYR 99 E10 heavy chain (C) VdWContact

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