Interactions for 5EKI (chain D)
Structure details
- PDB ID: 5EKI open_in_new
- Protein: CCL21_HUMAN
- Organism: Homo sapiens
- UniProt ID: O00585 open_in_new
- Method: X-ray
- Resolution: 1.9 Å
- Date: Oct. 5, 2016
- Reference: 10.1021/ACS.BIOCHEM.6B00304 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Gln 6 | 61 | N-term | PRO 76 | C-C motif chemokine 21 (A) | Hydrophobic |
| Asp 7 | 62 | N-term | GLN 74 | C-C motif chemokine 21 (A) | VdWContact |
| Asp 7 | 62 | N-term | LYS 75 | C-C motif chemokine 21 (A) | VdWContact |
| Asp 7 | 62 | N-term | ARG 26 | C-C motif chemokine 21 (A) | HBAcceptor |
| Asp 7 | 62 | N-term | ARG 26 | C-C motif chemokine 21 (A) | Anionic |
| Asp 7 | 62 | N-term | ARG 26 | C-C motif chemokine 21 (A) | VdWContact |
| Asp 7 | 62 | N-term | PRO 73 | C-C motif chemokine 21 (A) | Hydrophobic |
| Cys 8 | 63 | CX | GLN 74 | C-C motif chemokine 21 (A) | HBAcceptor |
| Cys 8 | 63 | CX | GLN 74 | C-C motif chemokine 21 (A) | HBDonor |
| Cys 8 | 63 | CX | GLN 74 | C-C motif chemokine 21 (A) | VdWContact |
| Leu 10 | 68 | N-loop | GLN 74 | C-C motif chemokine 21 (A) | Hydrophobic |
| Lys 11 | 69 | N-loop | PRO 71 | C-C motif chemokine 21 (A) | Hydrophobic |
| Lys 11 | 69 | N-loop | ASP 68 | C-C motif chemokine 21 (A) | Hydrophobic |
| Lys 11 | 69 | N-loop | ASP 68 | C-C motif chemokine 21 (A) | Cationic |
| Lys 11 | 69 | N-loop | ASP 68 | C-C motif chemokine 21 (A) | VdWContact |
| Ser 13 | 71 | N-loop | PRO 71 | C-C motif chemokine 21 (A) | VdWContact |
| Gln 14 | 72 | N-loop | LYS 69 | C-C motif chemokine 21 (A) | HBDonor |
| Gln 14 | 72 | N-loop | LYS 69 | C-C motif chemokine 21 (A) | VdWContact |
| Arg 15 | 73 | N-loop | THR 70 | C-C motif chemokine 21 (A) | Hydrophobic |
| Arg 23 | 84 | B1 | SER 47 | C-C motif chemokine 21 (E) | VdWContact |
| Arg 23 | 84 | B1 | ALA 49 | C-C motif chemokine 21 (E) | VdWContact |
| Leu 40 | 102 | B2 | PRO 73 | C-C motif chemokine 21 (A) | Hydrophobic |
| Arg 46 | 108 | 40s-loop | ARG 46 | C-C motif chemokine 21 (A) | VdWContact |
| Ser 47 | 109 | 40s-loop | ARG 44 | C-C motif chemokine 21 (A) | VdWContact |
| Ala 49 | 114 | 40s-loop | ARG 23 | C-C motif chemokine 21 (A) | Hydrophobic |
| Glu 50 | 115 | B3 | PRO 73 | C-C motif chemokine 21 (A) | Hydrophobic |
| Glu 50 | 115 | B3 | SER 72 | C-C motif chemokine 21 (A) | VdWContact |
| Leu 51 | 116 | B3 | PRO 71 | C-C motif chemokine 21 (A) | VdWContact |
| Cys 52 | 117 | B3 | PRO 71 | C-C motif chemokine 21 (A) | Hydrophobic |
| Cys 52 | 117 | B3 | PRO 71 | C-C motif chemokine 21 (A) | HBDonor |
| Cys 52 | 117 | B3 | PRO 71 | C-C motif chemokine 21 (A) | VdWContact |
| Asp 68 | 133 | Helix | LYS 11 | C-C motif chemokine 21 (E) | Anionic |
| Asp 68 | 133 | Helix | LYS 11 | C-C motif chemokine 21 (E) | VdWContact |
| Lys 69 | 134 | Helix | GLN 14 | C-C motif chemokine 21 (E) | HBAcceptor |
| Lys 69 | 134 | Helix | GLN 14 | C-C motif chemokine 21 (E) | VdWContact |
| Lys 69 | 134 | Helix | SER 13 | C-C motif chemokine 21 (E) | VdWContact |
| Thr 70 | 135 | Helix | ARG 15 | C-C motif chemokine 21 (E) | Hydrophobic |
| Pro 71 | 136 | C-term | SER 13 | C-C motif chemokine 21 (E) | VdWContact |
| Pro 71 | 136 | C-term | LYS 11 | C-C motif chemokine 21 (E) | Hydrophobic |
| Pro 71 | 136 | C-term | CYS 52 | C-C motif chemokine 21 (E) | Hydrophobic |
| Pro 71 | 136 | C-term | CYS 52 | C-C motif chemokine 21 (E) | HBAcceptor |
| Pro 71 | 136 | C-term | CYS 52 | C-C motif chemokine 21 (E) | VdWContact |
| Pro 73 | 138 | C-term | LEU 40 | C-C motif chemokine 21 (E) | Hydrophobic |
| Pro 73 | 138 | C-term | GLU 50 | C-C motif chemokine 21 (E) | Hydrophobic |
| Pro 73 | 138 | C-term | ASP 7 | C-C motif chemokine 21 (E) | Hydrophobic |
| Gln 74 | 139 | C-term | LEU 10 | C-C motif chemokine 21 (E) | Hydrophobic |
| Gln 74 | 139 | C-term | LEU 10 | C-C motif chemokine 21 (E) | VdWContact |
| Gln 74 | 139 | C-term | CYS 8 | C-C motif chemokine 21 (E) | HBAcceptor |
| Gln 74 | 139 | C-term | CYS 8 | C-C motif chemokine 21 (E) | HBDonor |
| Gln 74 | 139 | C-term | CYS 8 | C-C motif chemokine 21 (E) | VdWContact |
| Lys 75 | 140 | C-term | ASP 7 | C-C motif chemokine 21 (E) | VdWContact |
| Lys 75 | 140 | C-term | ALA 5 | C-C motif chemokine 21 (E) | HBDonor |
| Lys 75 | 140 | C-term | ALA 5 | C-C motif chemokine 21 (E) | VdWContact |
| Pro 76 | 176 | C-term | GLY 33 | C-C motif chemokine 21 (E) | VdWContact |
Ligand interaction network
SO4_A_101
SO4_B_101
SO4_C_101
SO4_E_101
SO4_F_101
Interaction pattern search
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