Interactions for 5OB5 (chain A)
Structure details
- PDB ID: 5OB5 open_in_new
- Protein: CXCL2_HUMAN
- Organism: Homo sapiens
- UniProt ID: P19875 open_in_new
- Method: X-ray
- Resolution: 1.65 Å
- Date: Nov. 8, 2017
- Reference: open_in_new
- State: monomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Leu 7 | 61 | N-term | TYR 57 | fAb Heavy chain (H) | Hydrophobic |
| Leu 7 | 61 | N-term | PHE 59 | fAb Heavy chain (H) | Hydrophobic |
| Leu 7 | 61 | N-term | TRP 33 | fAb Heavy chain (H) | Hydrophobic |
| Arg 8 | 62 | N-term | ASP 102 | fAb Heavy chain (H) | Hydrophobic |
| Arg 8 | 62 | N-term | TYR 32 | fAb Light chain (L) | Hydrophobic |
| Arg 8 | 62 | N-term | GLU 30 | fAb Light chain (L) | Cationic |
| Arg 8 | 62 | N-term | GLY 92 | fAb Light chain (L) | VdWContact |
| Arg 8 | 62 | N-term | THR 104 | fAb Heavy chain (H) | Hydrophobic |
| Cys 9 | 63 | CX | ASP 102 | fAb Heavy chain (H) | HBDonor |
| Cys 9 | 63 | CX | ASP 102 | fAb Heavy chain (H) | VdWContact |
| Cys 9 | 63 | CX | TYR 50 | fAb Light chain (L) | Hydrophobic |
| Cys 9 | 63 | CX | TYR 32 | fAb Light chain (L) | HBAcceptor |
| Cys 9 | 63 | CX | TYR 32 | fAb Light chain (L) | VdWContact |
| Leu 12 | 68 | N-loop | ARG 53 | fAb Light chain (L) | HBAcceptor |
| Leu 12 | 68 | N-loop | ARG 53 | fAb Light chain (L) | VdWContact |
| Leu 12 | 68 | N-loop | TYR 50 | fAb Light chain (L) | Hydrophobic |
| Leu 12 | 68 | N-loop | TYR 50 | fAb Light chain (L) | VdWContact |
| Leu 12 | 68 | N-loop | TYR 32 | fAb Light chain (L) | Hydrophobic |
| Gln 13 | 69 | N-loop | ARG 53 | fAb Light chain (L) | VdWContact |
| Pro 33 | 93 | 30s-loop | TYR 57 | fAb Heavy chain (H) | Hydrophobic |
| Pro 33 | 93 | 30s-loop | TYR 52 | fAb Heavy chain (H) | Hydrophobic |
| Pro 33 | 93 | 30s-loop | TYR 52 | fAb Heavy chain (H) | VdWContact |
| Pro 33 | 93 | 30s-loop | TRP 33 | fAb Heavy chain (H) | Hydrophobic |
| Pro 33 | 93 | 30s-loop | TRP 33 | fAb Heavy chain (H) | HBAcceptor |
| Pro 33 | 93 | 30s-loop | TRP 33 | fAb Heavy chain (H) | VdWContact |
| Cys 35 | 95 | 30s-loop | TYR 101 | fAb Heavy chain (H) | VdWContact |
| Ala 36 | 96 | 30s-loop | TYR 101 | fAb Heavy chain (H) | HBDonor |
| Ala 36 | 96 | 30s-loop | TYR 101 | fAb Heavy chain (H) | VdWContact |
| Ala 36 | 96 | 30s-loop | TYR 32 | fAb Heavy chain (H) | Hydrophobic |
| Gln 37 | 97 | 30s-loop | TYR 101 | fAb Heavy chain (H) | Hydrophobic |
Ligand interaction network
GOL_A_101
GOL_H_301
SO4_H_302
SO4_H_303
SO4_H_304
GOL_L_301
GOL_L_302
Interaction pattern search
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