Interactions for 5YAM (chain A)
Structure details
- PDB ID: 5YAM open_in_new
- Protein: CCL5_MOUSE
- Organism: Mus musculus
- UniProt ID: P30882 open_in_new
- Method: Solution nmr
- Resolution: 0.0 Å
- Date: Sept. 5, 2018
- Reference: 10.1016/J.JMB.2019.12.049 open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Tyr 4 | 56 | N-term | LEU 16 | C-C motif chemokine 5 (B) | Hydrophobic |
| Tyr 4 | 56 | N-term | LEU 16 | C-C motif chemokine 5 (B) | VdWContact |
| Ser 6 | 58 | N-term | CYS 51 | C-C motif chemokine 5 (B) | HBAcceptor |
| Ser 6 | 58 | N-term | CYS 51 | C-C motif chemokine 5 (B) | VdWContact |
| Ser 6 | 58 | N-term | ALA 14 | C-C motif chemokine 5 (B) | VdWContact |
| Asp 7 | 59 | N-term | GLN 49 | C-C motif chemokine 5 (B) | VdWContact |
| Asp 7 | 59 | N-term | CYS 51 | C-C motif chemokine 5 (B) | VdWContact |
| Asp 7 | 59 | N-term | CYS 12 | C-C motif chemokine 5 (B) | VdWContact |
| Thr 8 | 60 | N-term | GLN 49 | C-C motif chemokine 5 (B) | VdWContact |
| Thr 8 | 60 | N-term | CYS 51 | C-C motif chemokine 5 (B) | VdWContact |
| Thr 8 | 60 | N-term | VAL 41 | C-C motif chemokine 5 (B) | Hydrophobic |
| Thr 8 | 60 | N-term | PRO 10 | C-C motif chemokine 5 (B) | Hydrophobic |
| Thr 9 | 61 | N-term | PRO 10 | C-C motif chemokine 5 (B) | VdWContact |
| Thr 9 | 61 | N-term | CYS 11 | C-C motif chemokine 5 (B) | HBAcceptor |
| Thr 9 | 61 | N-term | CYS 11 | C-C motif chemokine 5 (B) | HBDonor |
| Thr 9 | 61 | N-term | CYS 11 | C-C motif chemokine 5 (B) | VdWContact |
| Pro 10 | 62 | N-term | THR 8 | C-C motif chemokine 5 (B) | Hydrophobic |
| Cys 11 | 63 | CX | THR 9 | C-C motif chemokine 5 (B) | HBAcceptor |
| Cys 11 | 63 | CX | THR 9 | C-C motif chemokine 5 (B) | HBDonor |
| Cys 11 | 63 | CX | THR 9 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 12 | 67 | CX | ASP 7 | C-C motif chemokine 5 (B) | VdWContact |
| Ala 14 | 69 | N-loop | SER 6 | C-C motif chemokine 5 (B) | VdWContact |
| Leu 16 | 71 | N-loop | TYR 4 | C-C motif chemokine 5 (B) | Hydrophobic |
| Val 41 | 102 | B2 | THR 8 | C-C motif chemokine 5 (B) | Hydrophobic |
| Arg 48 | 114 | 40s-loop | SER 2 | C-C motif chemokine 5 (B) | VdWContact |
| Arg 48 | 114 | 40s-loop | MET 1 | C-C motif chemokine 5 (B) | VdWContact |
| Gln 49 | 115 | B3 | ASP 7 | C-C motif chemokine 5 (B) | VdWContact |
| Gln 49 | 115 | B3 | THR 8 | C-C motif chemokine 5 (B) | HBAcceptor |
| Gln 49 | 115 | B3 | THR 8 | C-C motif chemokine 5 (B) | VdWContact |
| Val 50 | 116 | B3 | ASP 7 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 51 | 117 | B3 | SER 6 | C-C motif chemokine 5 (B) | HBDonor |
| Cys 51 | 117 | B3 | SER 6 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 51 | 117 | B3 | ASP 7 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 51 | 117 | B3 | THR 8 | C-C motif chemokine 5 (B) | VdWContact |
Interaction pattern search
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