Interactions for 6VGJ (chain A)
Structure details
- PDB ID: 6VGJ open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.52 Å
- Date: Oct. 7, 2020
- Reference: 10.1107/S2059798320011687 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Met 2 | 31 | N-term | LEU 32 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Met 2 | 31 | N-term | ILE 31 | C-X-C motif chemokine 13 (D) | VdWContact |
| Met 2 | 31 | N-term | GLN 30 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Glu 3 | 55 | N-term | ILE 31 | C-X-C motif chemokine 13 (D) | HBAcceptor |
| Glu 3 | 55 | N-term | ILE 31 | C-X-C motif chemokine 13 (D) | HBDonor |
| Glu 3 | 55 | N-term | ILE 31 | C-X-C motif chemokine 13 (D) | VdWContact |
| Val 4 | 56 | N-term | ARG 28 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Val 4 | 56 | N-term | GLN 30 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Val 4 | 56 | N-term | ILE 29 | C-X-C motif chemokine 13 (D) | VdWContact |
| Tyr 5 | 57 | N-term | ARG 28 | C-X-C motif chemokine 13 (D) | VdWContact |
| Tyr 5 | 57 | N-term | MET 66 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Tyr 5 | 57 | N-term | MET 66 | C-X-C motif chemokine 13 (D) | VdWContact |
| Tyr 5 | 57 | N-term | ILE 29 | C-X-C motif chemokine 13 (D) | HBAcceptor |
| Tyr 5 | 57 | N-term | ILE 29 | C-X-C motif chemokine 13 (D) | HBDonor |
| Tyr 5 | 57 | N-term | ILE 29 | C-X-C motif chemokine 13 (D) | VdWContact |
| Tyr 5 | 57 | N-term | ILE 31 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Tyr 5 | 57 | N-term | LEU 69 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Tyr 5 | 57 | N-term | ARG 70 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Tyr 5 | 57 | N-term | ARG 70 | C-X-C motif chemokine 13 (D) | VdWContact |
| Tyr 6 | 58 | N-term | ARG 28 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Tyr 6 | 58 | N-term | ARG 28 | C-X-C motif chemokine 13 (D) | HBAcceptor |
| Tyr 6 | 58 | N-term | ARG 28 | C-X-C motif chemokine 13 (D) | VdWContact |
| Thr 7 | 59 | N-term | ASP 27 | C-X-C motif chemokine 13 (D) | VdWContact |
| Thr 7 | 59 | N-term | ARG 23 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Thr 7 | 59 | N-term | ILE 26 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Thr 7 | 59 | N-term | ILE 26 | C-X-C motif chemokine 13 (D) | HBDonor |
| Thr 7 | 59 | N-term | ILE 26 | C-X-C motif chemokine 13 (D) | VdWContact |
| Gln 15 | 69 | N-loop | SER 73 | C-X-C motif chemokine 13 (D) | HBAcceptor |
| Gln 15 | 69 | N-loop | SER 73 | C-X-C motif chemokine 13 (D) | VdWContact |
| Phe 20 | 74 | N-loop | ARG 64 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Phe 20 | 74 | N-loop | ARG 64 | C-X-C motif chemokine 13 (E) | PiCation |
| Phe 20 | 74 | N-loop | ARG 64 | C-X-C motif chemokine 13 (E) | VdWContact |
| Arg 23 | 80 | N-loop | THR 7 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (C) | HBAcceptor |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (C) | VdWContact |
| Asp 27 | 84 | B1 | THR 7 | C-X-C motif chemokine 13 (C) | HBAcceptor |
| Arg 28 | 85 | B1 | TYR 5 | C-X-C motif chemokine 13 (C) | VdWContact |
| Arg 28 | 85 | B1 | VAL 4 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Arg 28 | 85 | B1 | VAL 4 | C-X-C motif chemokine 13 (C) | VdWContact |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (C) | VdWContact |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (C) | HBAcceptor |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (C) | HBDonor |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (C) | VdWContact |
| Ile 29 | 86 | B1 | VAL 4 | C-X-C motif chemokine 13 (C) | VdWContact |
| Gln 30 | 87 | B1 | GLU 3 | C-X-C motif chemokine 13 (C) | VdWContact |
| Gln 30 | 87 | B1 | MET 2 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Gln 30 | 87 | B1 | VAL 4 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (C) | HBAcceptor |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (C) | HBDonor |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (C) | VdWContact |
| Ile 31 | 88 | B1 | MET 2 | C-X-C motif chemokine 13 (C) | VdWContact |
| Ile 31 | 88 | B1 | TYR 5 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Leu 32 | 89 | B1 | MET 2 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Glu 60 | 123 | Helix | ARG 70 | C-X-C motif chemokine 13 (E) | Anionic |
| Glu 60 | 123 | Helix | ARG 70 | C-X-C motif chemokine 13 (E) | VdWContact |
| Met 65 | 128 | Helix | THR 7 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Leu 69 | 132 | Helix | TYR 5 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Arg 70 | 133 | Helix | TYR 5 | C-X-C motif chemokine 13 (C) | Hydrophobic |
| Arg 70 | 133 | Helix | TYR 5 | C-X-C motif chemokine 13 (C) | VdWContact |
| Ser 73 | 136 | C-term | GLN 15 | C-X-C motif chemokine 13 (C) | HBDonor |
| Ser 73 | 136 | C-term | GLN 15 | C-X-C motif chemokine 13 (C) | VdWContact |
| Ser 75 | 138 | C-term | ARG 12 | C-X-C motif chemokine 13 (G) | VdWContact |
| Leu 77 | 140 | C-term | ARG 12 | C-X-C motif chemokine 13 (G) | HBAcceptor |
| Leu 77 | 140 | C-term | ARG 12 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 79 | 142 | C-term | ILE 44 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 79 | 142 | C-term | ILE 52 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 79 | 142 | C-term | CYS 54 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 79 | 142 | C-term | ARG 12 | C-X-C motif chemokine 13 (G) | HBDonor |
| Val 79 | 142 | C-term | ARG 12 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 81 | 144 | C-term | VAL 14 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 81 | 144 | C-term | GLN 15 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 81 | 144 | C-term | GLN 15 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 81 | 144 | C-term | TYR 5 | C-X-C motif chemokine 13 (G) | Hydrophobic |
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