Interactions for 6VGJ (chain D)
Structure details
- PDB ID: 6VGJ open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.52 Å
- Date: Oct. 7, 2020
- Reference: 10.1107/S2059798320011687 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Leu 9 | 61 | N-term | PRO 80 | C-X-C motif chemokine 13 (E) | VdWContact |
| Leu 9 | 61 | N-term | VAL 79 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Leu 9 | 61 | N-term | VAL 79 | C-X-C motif chemokine 13 (E) | VdWContact |
| Arg 10 | 62 | N-term | LEU 77 | C-X-C motif chemokine 13 (E) | Cationic |
| Arg 23 | 80 | N-loop | THR 7 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (A) | HBAcceptor |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (A) | VdWContact |
| Asp 27 | 84 | B1 | THR 7 | C-X-C motif chemokine 13 (A) | VdWContact |
| Arg 28 | 85 | B1 | VAL 4 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (A) | HBDonor |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (A) | VdWContact |
| Arg 28 | 85 | B1 | TYR 5 | C-X-C motif chemokine 13 (A) | VdWContact |
| Ile 29 | 86 | B1 | VAL 4 | C-X-C motif chemokine 13 (A) | VdWContact |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (A) | HBAcceptor |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (A) | HBDonor |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (A) | VdWContact |
| Gln 30 | 87 | B1 | MET 2 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Gln 30 | 87 | B1 | VAL 4 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Ile 31 | 88 | B1 | MET 2 | C-X-C motif chemokine 13 (A) | VdWContact |
| Ile 31 | 88 | B1 | TYR 5 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (A) | HBAcceptor |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (A) | HBDonor |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (A) | VdWContact |
| Leu 32 | 89 | B1 | MET 2 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 34 | 91 | 30s-loop | ARG 24 | C-X-C motif chemokine 13 (B) | VdWContact |
| Met 66 | 129 | Helix | TYR 5 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Met 66 | 129 | Helix | TYR 5 | C-X-C motif chemokine 13 (A) | VdWContact |
| Leu 69 | 132 | Helix | TYR 5 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 70 | 133 | Helix | TYR 5 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 70 | 133 | Helix | TYR 5 | C-X-C motif chemokine 13 (A) | VdWContact |
| Ser 73 | 136 | C-term | GLN 15 | C-X-C motif chemokine 13 (A) | HBDonor |
| Ser 73 | 136 | C-term | GLN 15 | C-X-C motif chemokine 13 (A) | VdWContact |
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