Interactions for 6VGJ (chain E)
Structure details
- PDB ID: 6VGJ open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.52 Å
- Date: Oct. 7, 2020
- Reference: 10.1107/S2059798320011687 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Glu 3 | 55 | N-term | ILE 31 | C-X-C motif chemokine 13 (G) | HBAcceptor |
| Glu 3 | 55 | N-term | ILE 31 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 4 | 56 | N-term | GLN 30 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 4 | 56 | N-term | GLN 30 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 4 | 56 | N-term | ARG 28 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 4 | 56 | N-term | ARG 28 | C-X-C motif chemokine 13 (G) | VdWContact |
| Tyr 5 | 57 | N-term | ILE 31 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Tyr 5 | 57 | N-term | LEU 69 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Tyr 5 | 57 | N-term | ARG 70 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Tyr 5 | 57 | N-term | ARG 28 | C-X-C motif chemokine 13 (G) | VdWContact |
| Tyr 5 | 57 | N-term | MET 66 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Tyr 5 | 57 | N-term | MET 66 | C-X-C motif chemokine 13 (G) | VdWContact |
| Tyr 5 | 57 | N-term | ILE 29 | C-X-C motif chemokine 13 (G) | HBAcceptor |
| Tyr 5 | 57 | N-term | ILE 29 | C-X-C motif chemokine 13 (G) | HBDonor |
| Tyr 5 | 57 | N-term | ILE 29 | C-X-C motif chemokine 13 (G) | VdWContact |
| Tyr 6 | 58 | N-term | ARG 28 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Tyr 6 | 58 | N-term | ARG 28 | C-X-C motif chemokine 13 (G) | VdWContact |
| Thr 7 | 59 | N-term | ILE 26 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Thr 7 | 59 | N-term | ILE 26 | C-X-C motif chemokine 13 (G) | HBDonor |
| Thr 7 | 59 | N-term | ILE 26 | C-X-C motif chemokine 13 (G) | VdWContact |
| Thr 7 | 59 | N-term | ASP 27 | C-X-C motif chemokine 13 (G) | HBDonor |
| Thr 7 | 59 | N-term | ASP 27 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 14 | 68 | N-loop | ARG 72 | C-X-C motif chemokine 13 (G) | Hydrophobic |
| Val 14 | 68 | N-loop | ARG 72 | C-X-C motif chemokine 13 (G) | VdWContact |
| Val 14 | 68 | N-loop | SER 73 | C-X-C motif chemokine 13 (G) | VdWContact |
| Gln 15 | 69 | N-loop | SER 73 | C-X-C motif chemokine 13 (G) | HBAcceptor |
| Gln 15 | 69 | N-loop | SER 73 | C-X-C motif chemokine 13 (G) | VdWContact |
| Arg 64 | 127 | Helix | PHE 20 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 64 | 127 | Helix | PHE 20 | C-X-C motif chemokine 13 (A) | CationPi |
| Arg 64 | 127 | Helix | PHE 20 | C-X-C motif chemokine 13 (A) | VdWContact |
| Arg 70 | 133 | Helix | GLU 60 | C-X-C motif chemokine 13 (A) | Cationic |
| Arg 70 | 133 | Helix | GLU 60 | C-X-C motif chemokine 13 (A) | VdWContact |
| Leu 77 | 140 | C-term | ARG 10 | C-X-C motif chemokine 13 (D) | Anionic |
| Val 79 | 142 | C-term | LEU 9 | C-X-C motif chemokine 13 (D) | Hydrophobic |
| Val 79 | 142 | C-term | LEU 9 | C-X-C motif chemokine 13 (D) | VdWContact |
| Pro 80 | 150 | C-term | LEU 9 | C-X-C motif chemokine 13 (D) | VdWContact |
Interaction pattern search
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