Interactions for 6VGJ (chain G)
Structure details
- PDB ID: 6VGJ open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.52 Å
- Date: Oct. 7, 2020
- Reference: 10.1107/S2059798320011687 open_in_new
- State: oligomer
Chemokine diagram
Pick color:
, 'snake_.png', {scale: 3});){kind=link}
, 'snake_.jpg', {scale: 3});){kind=link}
Interactions found in structure
Download list in excel
| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Tyr 5 | 57 | N-term | VAL 81 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Arg 12 | 66 | CX | VAL 79 | C-X-C motif chemokine 13 (A) | HBAcceptor |
| Arg 12 | 66 | CX | VAL 79 | C-X-C motif chemokine 13 (A) | VdWContact |
| Arg 12 | 66 | CX | LEU 77 | C-X-C motif chemokine 13 (A) | HBDonor |
| Arg 12 | 66 | CX | LEU 77 | C-X-C motif chemokine 13 (A) | VdWContact |
| Arg 12 | 66 | CX | SER 75 | C-X-C motif chemokine 13 (A) | VdWContact |
| Val 14 | 68 | N-loop | VAL 81 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Gln 15 | 69 | N-loop | VAL 81 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Gln 15 | 69 | N-loop | VAL 81 | C-X-C motif chemokine 13 (A) | VdWContact |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (E) | HBAcceptor |
| Ile 26 | 83 | B1 | THR 7 | C-X-C motif chemokine 13 (E) | VdWContact |
| Asp 27 | 84 | B1 | THR 7 | C-X-C motif chemokine 13 (E) | HBAcceptor |
| Asp 27 | 84 | B1 | THR 7 | C-X-C motif chemokine 13 (E) | VdWContact |
| Arg 28 | 85 | B1 | VAL 4 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Arg 28 | 85 | B1 | VAL 4 | C-X-C motif chemokine 13 (E) | VdWContact |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Arg 28 | 85 | B1 | TYR 6 | C-X-C motif chemokine 13 (E) | VdWContact |
| Arg 28 | 85 | B1 | TYR 5 | C-X-C motif chemokine 13 (E) | VdWContact |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (E) | HBAcceptor |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (E) | HBDonor |
| Ile 29 | 86 | B1 | TYR 5 | C-X-C motif chemokine 13 (E) | VdWContact |
| Gln 30 | 87 | B1 | VAL 4 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Gln 30 | 87 | B1 | VAL 4 | C-X-C motif chemokine 13 (E) | VdWContact |
| Ile 31 | 88 | B1 | TYR 5 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (E) | HBDonor |
| Ile 31 | 88 | B1 | GLU 3 | C-X-C motif chemokine 13 (E) | VdWContact |
| Ile 44 | 102 | B2 | VAL 79 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Ile 52 | 115 | B3 | VAL 79 | C-X-C motif chemokine 13 (A) | Hydrophobic |
| Cys 54 | 117 | B3 | VAL 79 | C-X-C motif chemokine 13 (A) | VdWContact |
| Met 66 | 129 | Helix | TYR 5 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Met 66 | 129 | Helix | TYR 5 | C-X-C motif chemokine 13 (E) | VdWContact |
| Leu 69 | 132 | Helix | TYR 5 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Arg 70 | 133 | Helix | TYR 5 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Arg 72 | 135 | Helix | VAL 14 | C-X-C motif chemokine 13 (E) | Hydrophobic |
| Arg 72 | 135 | Helix | VAL 14 | C-X-C motif chemokine 13 (E) | VdWContact |
| Ser 73 | 136 | C-term | GLN 15 | C-X-C motif chemokine 13 (E) | HBDonor |
| Ser 73 | 136 | C-term | GLN 15 | C-X-C motif chemokine 13 (E) | VdWContact |
| Ser 73 | 136 | C-term | VAL 14 | C-X-C motif chemokine 13 (E) | VdWContact |
Interaction pattern search
Search complexes with similar interaction patterns:
