Interactions for 1DOM — Binding Partner: CCL2


Structure details

  • Chemokine Chain: A
  • Partner Chain: B
Download Full PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

T S S K C P K E A 30s-loop I V A K 40s-loop D P K Q 50s-loopC-term Q P D A I N A P V T C C Y N F T N R K I S V Q R N-term I R R Y S A L V I F K T A C I E K W V Q D S M D H L D K Q T Q T P K T
Pick color:
 
 
 
 
 
 
 
 
 
 
 
 


Interactions for this Binding Partner

Download list in excel
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ala 4 56 N-term LYS 49 B Hydrophobic
Ile 5 57 N-term ASN 14 B Hydrophobic
Ile 5 57 N-term ASN 14 B VdWContact
Asn 6 58 N-term CYS 52 B HBAcceptor
Asn 6 58 N-term CYS 52 B VdWContact
Asn 6 58 N-term PHE 15 B VdWContact
Asn 6 58 N-term THR 16 B Hydrophobic
Asn 6 58 N-term THR 16 B VdWContact
Asn 6 58 N-term ILE 51 B Hydrophobic
Asn 6 58 N-term ILE 51 B VdWContact
Asn 6 58 N-term ASN 14 B Hydrophobic
Asn 6 58 N-term ASN 14 B VdWContact
Ala 7 59 N-term GLU 50 B VdWContact
Pro 8 60 N-term GLU 50 B Hydrophobic
Pro 8 60 N-term GLU 50 B VdWContact
Pro 8 60 N-term CYS 52 B VdWContact
Pro 8 60 N-term CYS 11 B VdWContact
Pro 8 60 N-term ILE 31 B Hydrophobic
Pro 8 60 N-term ILE 42 B Hydrophobic
Pro 8 60 N-term ILE 42 B VdWContact
Val 9 61 N-term TYR 13 B Hydrophobic
Val 9 61 N-term TYR 13 B VdWContact
Val 9 61 N-term CYS 12 B VdWContact
Val 9 61 N-term CYS 11 B VdWContact
Thr 10 62 N-term THR 10 B Hydrophobic
Thr 10 62 N-term THR 10 B VdWContact
Cys 11 63 CX PRO 8 B VdWContact
Cys 11 63 CX VAL 9 B VdWContact
Cys 12 67 CX VAL 9 B VdWContact
Tyr 13 68 N-loop PRO 37 B VdWContact
Tyr 13 68 N-loop LYS 35 B Hydrophobic
Tyr 13 68 N-loop LYS 35 B VdWContact
Tyr 13 68 N-loop VAL 9 B Hydrophobic
Tyr 13 68 N-loop VAL 9 B VdWContact
Asn 14 69 N-loop ILE 5 B Hydrophobic
Asn 14 69 N-loop ILE 5 B VdWContact
Asn 14 69 N-loop ASN 6 B Hydrophobic
Asn 14 69 N-loop ASN 6 B VdWContact
Phe 15 70 N-loop ASN 6 B VdWContact
Thr 16 71 N-loop ASN 6 B Hydrophobic
Thr 16 71 N-loop ASN 6 B VdWContact
Ile 31 89 B1 PRO 8 B Hydrophobic
Lys 35 94 30s-loop TYR 13 B Hydrophobic
Lys 35 94 30s-loop TYR 13 B VdWContact
Pro 37 96 30s-loop TYR 13 B VdWContact
Ile 42 102 B2 PRO 8 B Hydrophobic
Ile 42 102 B2 PRO 8 B VdWContact
Lys 49 114 40s-loop ALA 4 B Hydrophobic
Glu 50 115 B3 PRO 8 B Hydrophobic
Glu 50 115 B3 PRO 8 B VdWContact
Glu 50 115 B3 ALA 7 B VdWContact
Ile 51 116 B3 ASN 6 B Hydrophobic
Ile 51 116 B3 ASN 6 B VdWContact
Cys 52 117 B3 PRO 8 B VdWContact
Cys 52 117 B3 ASN 6 B HBDonor
Cys 52 117 B3 ASN 6 B VdWContact

Interaction pattern search
Search complexes with similar interaction patterns:

Specify the minimum similarity (0.00 no similarity, 1.00 identical)