Interactions for 2JP1 — Binding Partner: XCL1
Structure details
- PDB ID: 2JP1 open_in_new
- Protein: XCL1_HUMAN
- Organism: Homo sapiens
- UniProt ID: P47992 open_in_new
- Method: Nmr
- Resolution:
- Date: March 11, 2008
- Reference: 10.1073/PNAS.0709518105 open_in_new
- State: Dimer
- Chemokine Chain: A
- Partner Chain: B
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Val 5 | NTc.Cm5 | N-term | THR 15 | B | Hydrophobic |
| Ser 6 | NTc.Cm4 | N-term | THR 15 | B | HBAcceptor |
| Ser 6 | NTc.Cm4 | N-term | THR 15 | B | VdWContact |
| Asp 7 | NTc.Cm3 | N-term | GLN 17 | B | HBAcceptor |
| Asp 7 | NTc.Cm3 | N-term | GLN 17 | B | VdWContact |
| Lys 8 | NTc.Cm2 | N-term | THR 16 | B | VdWContact |
| Thr 10 | CX.4 | CX | THR 15 | B | HBDonor |
| Thr 10 | CX.4 | CX | THR 15 | B | VdWContact |
| Thr 10 | CX.4 | CX | LEU 14 | B | Hydrophobic |
| Thr 10 | CX.4 | CX | LEU 14 | B | VdWContact |
| Val 12 | cxb1.1 | N-loop | VAL 12 | B | Hydrophobic |
| Val 12 | cxb1.1 | N-loop | VAL 12 | B | VdWContact |
| Val 12 | cxb1.1 | N-loop | LEU 14 | B | Hydrophobic |
| Leu 14 | cxb1.5 | N-loop | ALA 49 | B | Hydrophobic |
| Leu 14 | cxb1.5 | N-loop | ALA 49 | B | VdWContact |
| Leu 14 | cxb1.5 | N-loop | VAL 47 | B | Hydrophobic |
| Leu 14 | cxb1.5 | N-loop | THR 10 | B | Hydrophobic |
| Leu 14 | cxb1.5 | N-loop | THR 10 | B | VdWContact |
| Leu 14 | cxb1.5 | N-loop | VAL 12 | B | Hydrophobic |
| Thr 16 | cxb1.7 | N-loop | ASP 7 | B | VdWContact |
| Thr 16 | cxb1.7 | N-loop | PRO 51 | B | Hydrophobic |
| Thr 16 | cxb1.7 | N-loop | PRO 51 | B | VdWContact |
| Thr 16 | cxb1.7 | N-loop | SER 6 | B | VdWContact |
| Gln 17 | cxb1.8 | N-loop | PRO 51 | B | Hydrophobic |
| Gln 17 | cxb1.8 | N-loop | PRO 51 | B | VdWContact |
| Gln 17 | cxb1.8 | N-loop | ASP 7 | B | Hydrophobic |
| Gln 17 | cxb1.8 | N-loop | ASP 7 | B | HBDonor |
| Gln 17 | cxb1.8 | N-loop | ASP 7 | B | VdWContact |
| Gln 17 | cxb1.8 | N-loop | GLN 52 | B | Hydrophobic |
| Gln 17 | cxb1.8 | N-loop | GLN 52 | B | HBAcceptor |
| Gln 17 | cxb1.8 | N-loop | GLN 52 | B | VdWContact |
| Arg 18 | cxb1.10 | N-loop | PRO 51 | B | VdWContact |
| Arg 18 | cxb1.10 | N-loop | LEU 34 | B | VdWContact |
| Arg 18 | cxb1.10 | N-loop | GLN 52 | B | HBAcceptor |
| Arg 18 | cxb1.10 | N-loop | GLN 52 | B | VdWContact |
| Leu 19 | cxb1.11 | N-loop | SER 33 | B | VdWContact |
| Lys 25 | B1.3 | B1 | GLU 31 | B | Hydrophobic |
| Lys 25 | B1.3 | B1 | GLU 31 | B | HBDonor |
| Lys 25 | B1.3 | B1 | GLU 31 | B | Cationic |
| Lys 25 | B1.3 | B1 | GLU 31 | B | VdWContact |
| Tyr 27 | B1.5 | B1 | ILE 29 | B | Hydrophobic |
| Tyr 27 | B1.5 | B1 | ILE 29 | B | VdWContact |
| Tyr 27 | B1.5 | B1 | GLU 31 | B | Hydrophobic |
| Tyr 27 | B1.5 | B1 | GLU 31 | B | HBDonor |
| Tyr 27 | B1.5 | B1 | GLU 31 | B | VdWContact |
| Ile 29 | B1.7 | B1 | ILE 38 | B | Hydrophobic |
| Ile 29 | B1.7 | B1 | ILE 38 | B | VdWContact |
| Ile 29 | B1.7 | B1 | TYR 27 | B | Hydrophobic |
| Ile 29 | B1.7 | B1 | TYR 27 | B | VdWContact |
| Ile 29 | B1.7 | B1 | ILE 29 | B | Hydrophobic |
| Ile 29 | B1.7 | B1 | ILE 29 | B | VdWContact |
| Glu 31 | b1b2.6 | 30s-loop | TYR 27 | B | HBAcceptor |
| Glu 31 | b1b2.6 | 30s-loop | TYR 27 | B | VdWContact |
| Glu 31 | b1b2.6 | 30s-loop | ILE 40 | B | Hydrophobic |
| Glu 31 | b1b2.6 | 30s-loop | ILE 40 | B | VdWContact |
| Glu 31 | b1b2.6 | 30s-loop | LYS 25 | B | Hydrophobic |
| Glu 31 | b1b2.6 | 30s-loop | LYS 25 | B | HBAcceptor |
| Glu 31 | b1b2.6 | 30s-loop | LYS 25 | B | Anionic |
| Glu 31 | b1b2.6 | 30s-loop | LYS 25 | B | VdWContact |
| Ser 33 | b1b2.13 | 30s-loop | LEU 19 | B | VdWContact |
| Leu 34 | b1b2.14 | 30s-loop | ILE 40 | B | Hydrophobic |
| Leu 34 | b1b2.14 | 30s-loop | ILE 40 | B | VdWContact |
| Leu 34 | b1b2.14 | 30s-loop | ARG 18 | B | VdWContact |
| Ala 36 | B2.1 | B2 | ILE 38 | B | Hydrophobic |
| Ala 36 | B2.1 | B2 | LEU 45 | B | Hydrophobic |
| Ile 38 | B2.3 | B2 | ILE 38 | B | Hydrophobic |
| Ile 38 | B2.3 | B2 | ILE 38 | B | VdWContact |
| Ile 38 | B2.3 | B2 | ILE 29 | B | Hydrophobic |
| Ile 38 | B2.3 | B2 | ILE 29 | B | VdWContact |
| Ile 38 | B2.3 | B2 | ALA 36 | B | Hydrophobic |
| Ile 40 | B2.5 | B2 | GLU 31 | B | Hydrophobic |
| Ile 40 | B2.5 | B2 | GLU 31 | B | VdWContact |
| Ile 40 | B2.5 | B2 | LEU 34 | B | Hydrophobic |
| Ile 40 | B2.5 | B2 | LEU 34 | B | VdWContact |
| Leu 45 | b2b3.12 | 40s-loop | ALA 49 | B | Hydrophobic |
| Leu 45 | b2b3.12 | 40s-loop | ALA 49 | B | VdWContact |
| Leu 45 | b2b3.12 | 40s-loop | ALA 36 | B | Hydrophobic |
| Leu 45 | b2b3.12 | 40s-loop | VAL 47 | B | Hydrophobic |
| Leu 45 | b2b3.12 | 40s-loop | VAL 47 | B | VdWContact |
| Val 47 | B3.2 | B3 | VAL 47 | B | Hydrophobic |
| Val 47 | B3.2 | B3 | VAL 47 | B | VdWContact |
| Val 47 | B3.2 | B3 | LEU 45 | B | Hydrophobic |
| Val 47 | B3.2 | B3 | LEU 45 | B | VdWContact |
| Val 47 | B3.2 | B3 | LEU 14 | B | Hydrophobic |
| Ala 49 | B3.4 | B3 | THR 16 | B | Hydrophobic |
| Ala 49 | B3.4 | B3 | THR 16 | B | VdWContact |
| Ala 49 | B3.4 | B3 | LEU 14 | B | Hydrophobic |
| Ala 49 | B3.4 | B3 | LEU 14 | B | VdWContact |
| Ala 49 | B3.4 | B3 | LEU 45 | B | Hydrophobic |
| Ala 49 | B3.4 | B3 | LEU 45 | B | VdWContact |
| Pro 51 | b3h.2 | 50s-loop | ARG 18 | B | Hydrophobic |
| Pro 51 | b3h.2 | 50s-loop | THR 16 | B | Hydrophobic |
| Pro 51 | b3h.2 | 50s-loop | THR 16 | B | VdWContact |
| Gln 52 | b3h.3 | 50s-loop | ARG 18 | B | VdWContact |
| Gln 52 | b3h.3 | 50s-loop | LEU 19 | B | VdWContact |
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