Interactions for 2K01 — Binding Partner: CXCL12


Structure details

  • Chemokine Chain: A
  • Partner Chain: C
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Chemokine diagram

L N T P N C A C 30s-loop K N N N R 40s-loop D P K L 50s-loopC-term K P V S L S Y R C P C R F F E S H V A R A N-term I K L H K V N Q I V A R L I C V Q K W I Q E Y L E K C L N K

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Pro 2 NTc.Cm7 N-term HIS 225 C Hydrophobic
Arg 20 cxb1.15 N-loop ASN 230 C HBDonor
Arg 20 cxb1.15 N-loop ASN 230 C VdWContact
Val 23 B1.2 B1 ASN 230 C HBAcceptor
Val 23 B1.2 B1 ASN 230 C VdWContact
Lys 24 B1.3 B1 ASN 230 C HBAcceptor
Lys 24 B1.3 B1 ASN 230 C VdWContact
His 25 B1.4 B1 ILE 228 C VdWContact
His 25 B1.4 B1 PRO 202 C Hydrophobic
His 25 B1.4 B1 PRO 202 C VdWContact
His 25 B1.4 B1 LEU 229 C VdWContact
His 25 B1.4 B1 LYS 227 C Hydrophobic
Leu 26 B1.5 B1 ILE 228 C Hydrophobic
Leu 26 B1.5 B1 ILE 228 C HBAcceptor
Leu 26 B1.5 B1 ILE 228 C HBDonor
Leu 26 B1.5 B1 ILE 228 C VdWContact
Leu 26 B1.5 B1 LYS 227 C VdWContact
Lys 27 B1.6 B1 HIS 225 C Hydrophobic
Lys 27 B1.6 B1 LEU 226 C VdWContact
Ile 28 B1.7 B1 TYR 261 C Hydrophobic
Ile 28 B1.7 B1 TYR 261 C VdWContact
Ile 28 B1.7 B1 HIS 225 C VdWContact
Ile 28 B1.7 B1 LEU 226 C Hydrophobic
Ile 28 B1.7 B1 LEU 226 C HBAcceptor
Ile 28 B1.7 B1 LEU 226 C HBDonor
Ile 28 B1.7 B1 LEU 226 C VdWContact
Leu 29 b1b2.4 30s-loop TYR 261 C HBAcceptor
Asn 30 b1b2.7 30s-loop TYR 261 C Hydrophobic
Asn 30 b1b2.7 30s-loop TYR 261 C HBAcceptor
Asn 30 b1b2.7 30s-loop TYR 261 C HBDonor
Asn 30 b1b2.7 30s-loop TYR 261 C VdWContact
Asn 30 b1b2.7 30s-loop LYS 224 C HBDonor
Asn 30 b1b2.7 30s-loop LYS 224 C VdWContact
Ala 35 b1b2.14 30s-loop LYS 268 C Hydrophobic
Ala 35 b1b2.14 30s-loop LYS 268 C VdWContact
Leu 36 b1b2.16 30s-loop CYS 265 C Hydrophobic
Leu 36 b1b2.16 30s-loop CYS 265 C VdWContact
Ile 38 B2.2 B2 CYS 265 C Hydrophobic
Pro 53 b3h.2 50s-loop CYS 265 C Hydrophobic
Pro 53 b3h.2 50s-loop CYS 265 C VdWContact
Lys 54 b3h.3 50s-loop LYS 268 C HBDonor
Lys 54 b3h.3 50s-loop LYS 268 C Cationic
Lys 54 b3h.3 50s-loop LYS 268 C VdWContact
Gln 59 H.4 Helix LEU 266 C Hydrophobic
Gln 59 H.4 Helix LEU 266 C VdWContact
Gln 59 H.4 Helix ASN 267 C HBAcceptor
Gln 59 H.4 Helix ASN 267 C VdWContact
Tyr 61 H.6 Helix ILE 228 C Hydrophobic
Tyr 61 H.6 Helix ILE 228 C HBDonor
Tyr 61 H.6 Helix ILE 228 C VdWContact
Tyr 61 H.6 Helix ASN 230 C Hydrophobic
Tyr 61 H.6 Helix ASN 230 C VdWContact
Leu 62 H.7 Helix LEU 266 C Hydrophobic
Leu 62 H.7 Helix LEU 266 C VdWContact
Leu 62 H.7 Helix LEU 262 C Hydrophobic
Leu 62 H.7 Helix LEU 262 C VdWContact
Leu 62 H.7 Helix CYS 265 C Hydrophobic
Lys 64 H.9 Helix CYS 236 C Hydrophobic
Ala 65 H.10 Helix GLN 259 C HBAcceptor
Ala 65 H.10 Helix GLN 259 C VdWContact
Ala 65 H.10 Helix ILE 238 C Hydrophobic
Ala 65 H.10 Helix LEU 262 C Hydrophobic
Ala 65 H.10 Helix PRO 253 C Hydrophobic
Ala 65 H.10 Helix PRO 253 C VdWContact
Ala 65 H.10 Helix CYS 236 C Hydrophobic
Ala 65 H.10 Helix CYS 236 C VdWContact
Leu 66 CT.1 C-term LEU 266 C Hydrophobic
Leu 66 CT.1 C-term GLN 259 C Hydrophobic
Leu 66 CT.1 C-term GLN 259 C VdWContact
Leu 66 CT.1 C-term LEU 262 C Hydrophobic
Leu 66 CT.1 C-term LEU 262 C VdWContact
Asn 67 CT.2 C-term GLN 259 C VdWContact
Lys 68 CT.3 C-term ALA 235 C Hydrophobic
Lys 68 CT.3 C-term ALA 235 C VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)