ChemoPar-db - the chemokine partner database

Interactions for 7RKM — Binding Partner: US28

Structure details

PDB ID: 7RKM open_in_new
Protein: CX3CL1_HUMAN
Organism: Homo sapiens
UniProt ID: P78423 open_in_new

Method: Cryo-em
Resolution: 3.5 Å
Date: Jan. 26, 2022
Reference: 10.1126/SCIADV.ABL5442 open_in_new
State: Monomer

Chemokine Chain: L
Partner Chain: R

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Interactions for this Binding Partner

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Chemokine Residue	Generic Number	Segment	Partner Residue	Partner Chain	Interaction Type

Chemokine Residue	Generic Number	Segment	Partner Residue	Partner Chain	Interaction Type
Ala 32	92	30s-loop	GLN 172	R	VdWContact
Ala 32	92	30s-loop	MET 174	R	Hydrophobic
Ala 32	92	30s-loop	MET 174	R	VdWContact
Arg 47	114	40s-loop	TYR 16	R	VdWContact
Asn 9	64	CX	PHE 25	R	HBAcceptor
Asn 9	64	CX	PHE 25	R	VdWContact
Cys 34	95	30s-loop	TYR 177	R	VdWContact
Cys 50	117	B3	ALA 20	R	HBDonor
Cys 50	117	B3	ALA 20	R	VdWContact
Cys 50	117	B3	PRO 22	R	VdWContact
Gly 35	96	30s-loop	THR 175	R	VdWContact
Gly 35	96	30s-loop	MET 174	R	VdWContact
Gly 4	59	N-term	ILE 274	R	VdWContact
His 2	57	N-term	TYR 40	R	Hydrophobic
His 2	57	N-term	TYR 40	R	VdWContact
His 2	57	N-term	PHE 281	R	Hydrophobic
His 2	57	N-term	PHE 111	R	Hydrophobic
His 2	57	N-term	TRP 89	R	Hydrophobic
His 2	57	N-term	TRP 89	R	PiStacking
His 2	57	N-term	TYR 112	R	HBAcceptor
His 2	57	N-term	TYR 112	R	VdWContact
His 3	58	N-term	LEU 248	R	Hydrophobic
His 3	58	N-term	LEU 273	R	Hydrophobic
His 3	58	N-term	LYS 270	R	VdWContact
His 3	58	N-term	GLU 277	R	VdWContact
Ile 10	65	CX	PRO 22	R	Hydrophobic
Ile 10	65	CX	VAL 24	R	Hydrophobic
Ile 10	65	CX	VAL 24	R	VdWContact
Ile 19	75	N-loop	TYR 16	R	Hydrophobic
Ile 40	102	B2	PRO 22	R	Hydrophobic
Ile 40	102	B2	PRO 22	R	VdWContact
Lys 7	62	N-term	GLN 172	R	Hydrophobic
Lys 7	62	N-term	TYR 92	R	HBDonor
Lys 7	62	N-term	TYR 92	R	CationPi
Lys 7	62	N-term	TYR 92	R	VdWContact
Phe 49	116	B3	THR 21	R	Hydrophobic
Phe 49	116	B3	TYR 16	R	Hydrophobic
Phe 49	116	B3	TYR 16	R	VdWContact
Ser 33	94	30s-loop	CYS 173	R	HBDonor
Ser 33	94	30s-loop	CYS 173	R	VdWContact
Ser 33	94	30s-loop	GLN 172	R	VdWContact
Thr 11	66	CX	CYS 23	R	HBAcceptor
Thr 11	66	CX	CYS 23	R	VdWContact
Thr 11	66	CX	PRO 22	R	VdWContact
Thr 16	71	N-loop	ASP 17	R	Hydrophobic
Val 5	60	N-term	LEU 93	R	Hydrophobic
Val 5	60	N-term	LEU 93	R	VdWContact
Val 5	60	N-term	TRP 89	R	Hydrophobic
Val 5	60	N-term	TYR 92	R	Hydrophobic

Showing 1 to 49 of 49 entries

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