Interactions for 7SK7 — Binding Partner: ACKR3
Structure details
- PDB ID: 7SK7 open_in_new
- Protein: CXCL12_HUMAN
- Organism: Homo sapiens
- UniProt ID: P48061 open_in_new
- Method: Cryo-em
- Resolution: 3.3 Å
- Date: July 27, 2022
- Reference: 10.1126/SCIADV.ABN8063 open_in_new
- State: Monomer
- Chemokine Chain: B
- Partner Chain: A
Chemokine diagram
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Interactions for this Binding Partner
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Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
---|---|---|---|---|---|
Tyr 7 | 61 | N-term | ARG 197 | A | VdWContact |
Tyr 7 | 61 | N-term | TYR 195 | A | Hydrophobic |
Tyr 7 | 61 | N-term | TYR 195 | A | VdWContact |
Arg 8 | 62 | N-term | ASP 275 | A | Cationic |
Arg 8 | 62 | N-term | PHE 294 | A | VdWContact |
Arg 8 | 62 | N-term | GLU 290 | A | HBDonor |
Arg 8 | 62 | N-term | GLU 290 | A | Cationic |
Arg 8 | 62 | N-term | GLU 290 | A | VdWContact |
Pro 10 | 66 | CX | PHE 285 | A | Hydrophobic |
Pro 10 | 66 | CX | PHE 285 | A | VdWContact |
Arg 12 | 68 | N-loop | ASP 275 | A | Cationic |
Arg 12 | 68 | N-loop | LEU 209 | A | Hydrophobic |
Arg 12 | 68 | N-loop | ILE 279 | A | Hydrophobic |
Phe 13 | 69 | N-loop | LYS 206 | A | Hydrophobic |
Phe 13 | 69 | N-loop | ILE 205 | A | Hydrophobic |
Phe 13 | 69 | N-loop | LEU 209 | A | Hydrophobic |
Phe 13 | 69 | N-loop | LEU 280 | A | Hydrophobic |
Phe 13 | 69 | N-loop | ILE 279 | A | Hydrophobic |
His 25 | 85 | B1 | VAL 28 | A | Hydrophobic |
His 25 | 85 | B1 | VAL 28 | A | VdWContact |
His 25 | 85 | B1 | ASP 30 | A | Hydrophobic |
His 25 | 85 | B1 | ASP 30 | A | HBDonor |
His 25 | 85 | B1 | ASP 30 | A | VdWContact |
Leu 26 | 86 | B1 | VAL 28 | A | HBDonor |
Leu 26 | 86 | B1 | VAL 28 | A | VdWContact |
Leu 26 | 86 | B1 | ASP 30 | A | HBAcceptor |
Leu 26 | 86 | B1 | ASP 30 | A | VdWContact |
Leu 26 | 86 | B1 | ILE 27 | A | Hydrophobic |
Leu 26 | 86 | B1 | VAL 29 | A | Hydrophobic |
Leu 26 | 86 | B1 | VAL 29 | A | VdWContact |
Lys 27 | 87 | B1 | ASP 30 | A | Hydrophobic |
Lys 27 | 87 | B1 | ASP 30 | A | Cationic |
Lys 27 | 87 | B1 | VAL 32 | A | Hydrophobic |
Ile 28 | 88 | B1 | ASP 30 | A | HBDonor |
Ile 28 | 88 | B1 | ASP 30 | A | VdWContact |
Ile 28 | 88 | B1 | VAL 32 | A | HBAcceptor |
Ile 28 | 88 | B1 | VAL 32 | A | VdWContact |
Ile 28 | 88 | B1 | VAL 29 | A | Hydrophobic |
Leu 29 | 89 | B1 | VAL 32 | A | Hydrophobic |
Leu 29 | 89 | B1 | PHE 285 | A | Hydrophobic |
Asn 30 | 90 | 30s-loop | VAL 32 | A | HBDonor |
Asn 30 | 90 | 30s-loop | VAL 32 | A | VdWContact |
Asn 30 | 90 | 30s-loop | MET 33 | A | Hydrophobic |
Asn 30 | 90 | 30s-loop | MET 33 | A | VdWContact |
Asn 30 | 90 | 30s-loop | CYS 34 | A | HBAcceptor |
Asn 30 | 90 | 30s-loop | CYS 34 | A | VdWContact |
Thr 31 | 91 | 30s-loop | CYS 34 | A | Hydrophobic |
Pro 32 | 92 | 30s-loop | ASN 191 | A | HBAcceptor |
Pro 32 | 92 | 30s-loop | ASN 191 | A | VdWContact |
Pro 32 | 92 | 30s-loop | CYS 34 | A | VdWContact |
Val 39 | 102 | B2 | HIS 281 | A | Hydrophobic |
Arg 47 | 114 | 40s-loop | LEU 280 | A | VdWContact |
Gln 48 | 115 | B3 | HIS 281 | A | Hydrophobic |
Gln 48 | 115 | B3 | HIS 281 | A | VdWContact |
Lys 54 | 121 | 50s-loop | GLU 202 | A | Cationic |
Trp 57 | 124 | Helix | ILE 27 | A | Hydrophobic |
Tyr 61 | 128 | Helix | VAL 29 | A | Hydrophobic |
Tyr 61 | 128 | Helix | ILE 27 | A | Hydrophobic |
Tyr 61 | 128 | Helix | ILE 27 | A | HBAcceptor |
Tyr 61 | 128 | Helix | ILE 27 | A | VdWContact |
Leu 62 | 129 | Helix | VAL 29 | A | Hydrophobic |
Ala 65 | 132 | Helix | VAL 29 | A | Hydrophobic |