Interactions for 8XWN — Binding Partner: CXCR2
Structure details
- PDB ID: 8XWN open_in_new
- Protein: CXCL8_HUMAN
- Organism: Homo sapiens
- UniProt ID: P10145 open_in_new
- Method: Cryo-em
- Resolution: 3.29 Å
- Date: Jan. 15, 2025
- Reference: open_in_new
- State: Dimer
- Chemokine Chain: D
- Partner Chain: R
Chemokine diagram
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Interactions for this Binding Partner
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Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
---|---|---|---|---|---|
Arg 7 | 56 | N-term | SER 193 | R | HBAcceptor |
Arg 7 | 56 | N-term | SER 193 | R | VdWContact |
Arg 7 | 56 | N-term | VAL 192 | R | VdWContact |
Arg 7 | 56 | N-term | SER 43 | R | VdWContact |
Ser 8 | 57 | N-term | LYS 108 | R | HBDonor |
Ser 8 | 57 | N-term | LYS 108 | R | VdWContact |
Ala 9 | 58 | N-term | VAL 192 | R | Hydrophobic |
Lys 10 | 59 | N-term | GLU 300 | R | HBDonor |
Lys 10 | 59 | N-term | GLU 300 | R | Cationic |
Lys 10 | 59 | N-term | GLU 300 | R | VdWContact |
Lys 10 | 59 | N-term | ASP 297 | R | HBDonor |
Lys 10 | 59 | N-term | ASP 297 | R | Cationic |
Lys 10 | 59 | N-term | ASP 297 | R | VdWContact |
Lys 10 | 59 | N-term | LYS 108 | R | VdWContact |
Glu 11 | 60 | N-term | LEU 296 | R | Hydrophobic |
Glu 11 | 60 | N-term | ASP 274 | R | VdWContact |
Glu 11 | 60 | N-term | ARG 212 | R | HBAcceptor |
Glu 11 | 60 | N-term | ARG 212 | R | Anionic |
Glu 11 | 60 | N-term | ARG 212 | R | VdWContact |
Glu 11 | 60 | N-term | ARG 278 | R | HBAcceptor |
Glu 11 | 60 | N-term | ARG 278 | R | Anionic |
Glu 11 | 60 | N-term | ARG 278 | R | VdWContact |
Glu 11 | 60 | N-term | ARG 208 | R | HBAcceptor |
Glu 11 | 60 | N-term | ARG 208 | R | Anionic |
Glu 11 | 60 | N-term | ARG 208 | R | VdWContact |
Leu 12 | 61 | N-term | SER 189 | R | VdWContact |
Leu 12 | 61 | N-term | VAL 192 | R | Hydrophobic |
Leu 12 | 61 | N-term | VAL 187 | R | Hydrophobic |
Leu 12 | 61 | N-term | TYR 197 | R | Hydrophobic |
Leu 12 | 61 | N-term | ARG 278 | R | HBAcceptor |
Leu 12 | 61 | N-term | ARG 278 | R | VdWContact |
Arg 13 | 62 | N-term | ASP 274 | R | HBDonor |
Arg 13 | 62 | N-term | ASP 274 | R | Cationic |
Arg 13 | 62 | N-term | ASP 274 | R | VdWContact |
Arg 13 | 62 | N-term | ASP 293 | R | HBDonor |
Arg 13 | 62 | N-term | ASP 293 | R | Cationic |
Arg 13 | 62 | N-term | ASP 293 | R | VdWContact |
Cys 14 | 63 | CX | ARG 289 | R | HBAcceptor |
Cys 14 | 63 | CX | ARG 289 | R | VdWContact |
Gln 15 | 66 | CX | CYS 39 | R | HBAcceptor |
Gln 15 | 66 | CX | CYS 39 | R | VdWContact |
Gln 15 | 66 | CX | PRO 38 | R | VdWContact |
Gln 15 | 66 | CX | ASN 191 | R | HBAcceptor |
Gln 15 | 66 | CX | ASN 191 | R | VdWContact |
Ile 17 | 68 | N-loop | ARG 289 | R | VdWContact |
Ile 17 | 68 | N-loop | GLU 284 | R | Hydrophobic |
Tyr 20 | 71 | N-loop | PRO 31 | R | Hydrophobic |
Tyr 20 | 71 | N-loop | PRO 31 | R | VdWContact |
Phe 24 | 75 | N-loop | PRO 31 | R | Hydrophobic |
Phe 24 | 75 | N-loop | PRO 31 | R | VdWContact |
Phe 28 | 82 | N-loop | PRO 31 | R | Hydrophobic |
Phe 28 | 82 | N-loop | PRO 30 | R | Hydrophobic |
Ser 37 | 91 | 30s-loop | ASN 202 | R | HBDonor |
Ser 37 | 91 | 30s-loop | ASN 202 | R | VdWContact |
Pro 39 | 93 | 30s-loop | VAL 187 | R | Hydrophobic |
Pro 39 | 93 | 30s-loop | ASP 199 | R | Hydrophobic |
Pro 39 | 93 | 30s-loop | THR 204 | R | Hydrophobic |
Pro 39 | 93 | 30s-loop | THR 204 | R | VdWContact |
Ile 47 | 102 | B2 | PRO 38 | R | Hydrophobic |
Leu 50 | 105 | B2 | PRO 31 | R | Hydrophobic |
Arg 54 | 114 | 40s-loop | LEU 33 | R | Hydrophobic |
Arg 54 | 114 | 40s-loop | LEU 33 | R | VdWContact |
Arg 54 | 114 | 40s-loop | PHE 32 | R | VdWContact |
Glu 55 | 115 | B3 | PRO 38 | R | Hydrophobic |
Glu 55 | 115 | B3 | PRO 38 | R | VdWContact |
Leu 56 | 116 | B3 | LEU 33 | R | Hydrophobic |
Leu 56 | 116 | B3 | PRO 31 | R | Hydrophobic |
Leu 56 | 116 | B3 | ALA 36 | R | Hydrophobic |
Leu 56 | 116 | B3 | ALA 36 | R | VdWContact |