Interactions for 8XWN — Binding Partner: CXCL8
Structure details
- PDB ID: 8XWN open_in_new
- Protein: CXCL8_HUMAN
- Organism: Homo sapiens
- UniProt ID: P10145 open_in_new
- Method: Cryo-em
- Resolution: 3.29 Å
- Date: Jan. 15, 2025
- Reference: open_in_new
- State: Dimer
- Chemokine Chain: D
- Partner Chain: E
Chemokine diagram
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Interactions for this Binding Partner
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Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
---|---|---|---|---|---|
Lys 30 | 84 | B1 | GLU 36 | E | HBAcceptor |
Lys 30 | 84 | B1 | GLU 36 | E | Cationic |
Lys 30 | 84 | B1 | GLU 36 | E | VdWContact |
Glu 31 | 85 | B1 | ILE 35 | E | Hydrophobic |
Glu 31 | 85 | B1 | ILE 35 | E | VdWContact |
Glu 31 | 85 | B1 | ARG 33 | E | HBAcceptor |
Glu 31 | 85 | B1 | ARG 33 | E | Anionic |
Glu 31 | 85 | B1 | ARG 33 | E | VdWContact |
Glu 31 | 85 | B1 | VAL 34 | E | VdWContact |
Leu 32 | 86 | B1 | ARG 33 | E | VdWContact |
Leu 32 | 86 | B1 | VAL 34 | E | HBAcceptor |
Leu 32 | 86 | B1 | VAL 34 | E | HBDonor |
Leu 32 | 86 | B1 | VAL 34 | E | VdWContact |
Arg 33 | 87 | B1 | GLU 31 | E | Cationic |
Arg 33 | 87 | B1 | LEU 32 | E | VdWContact |
Val 34 | 88 | B1 | GLU 31 | E | VdWContact |
Val 34 | 88 | B1 | ALA 76 | E | Hydrophobic |
Val 34 | 88 | B1 | PHE 72 | E | Hydrophobic |
Val 34 | 88 | B1 | LEU 32 | E | HBAcceptor |
Val 34 | 88 | B1 | LEU 32 | E | HBDonor |
Val 34 | 88 | B1 | LEU 32 | E | VdWContact |
Val 34 | 88 | B1 | LEU 73 | E | Hydrophobic |
Ile 35 | 89 | B1 | GLU 31 | E | Hydrophobic |
Ile 35 | 89 | B1 | GLU 31 | E | VdWContact |
Glu 36 | 90 | 30s-loop | LYS 30 | E | HBDonor |
Glu 36 | 90 | 30s-loop | LYS 30 | E | Anionic |
Glu 36 | 90 | 30s-loop | LYS 30 | E | VdWContact |
Glu 36 | 90 | 30s-loop | ARG 75 | E | HBAcceptor |
Glu 36 | 90 | 30s-loop | ARG 75 | E | Anionic |
Glu 36 | 90 | 30s-loop | ARG 75 | E | VdWContact |
Glu 36 | 90 | 30s-loop | PHE 72 | E | Hydrophobic |
Thr 44 | 99 | 30s-loop | ALA 76 | E | Hydrophobic |
Thr 44 | 99 | 30s-loop | ALA 76 | E | HBDonor |
Thr 44 | 99 | 30s-loop | ALA 76 | E | VdWContact |
Lys 61 | 121 | 50s-loop | GLU 77 | E | HBDonor |
Lys 61 | 121 | 50s-loop | GLU 77 | E | VdWContact |
Val 69 | 129 | Helix | LEU 73 | E | Hydrophobic |
Phe 72 | 132 | Helix | GLU 36 | E | Hydrophobic |
Phe 72 | 132 | Helix | VAL 34 | E | Hydrophobic |
Leu 73 | 133 | Helix | VAL 34 | E | Hydrophobic |
Leu 73 | 133 | Helix | LEU 73 | E | Hydrophobic |
Leu 73 | 133 | Helix | LEU 73 | E | VdWContact |
Arg 75 | 135 | Helix | GLU 36 | E | HBDonor |
Arg 75 | 135 | Helix | GLU 36 | E | Cationic |
Arg 75 | 135 | Helix | GLU 36 | E | VdWContact |
Ala 76 | 136 | C-term | GLU 36 | E | Hydrophobic |
Glu 77 | 137 | C-term | GLN 66 | E | VdWContact |