Interactions for 4LMQ — Binding Partner: CXCL12


Structure details

  • Chemokine Chain: F
  • Partner Chain: D
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Chemokine diagram

L N T P N C A L 30s-loop K N N N R 40s-loop D P K L 50s-loopC-term R C P C R F F E S H V A R A N-term I K L H K V N Q I V A R L I C V Q K W I Q E Y L E K A

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Lys 24 B1.3 B1 ASN 30 D HBAcceptor
Lys 24 B1.3 B1 ASN 30 D VdWContact
His 25 B1.4 B1 LEU 29 D Hydrophobic
His 25 B1.4 B1 LYS 27 D Hydrophobic
His 25 B1.4 B1 LYS 27 D PiCation
His 25 B1.4 B1 LYS 27 D VdWContact
Leu 26 B1.5 B1 ILE 28 D HBAcceptor
Leu 26 B1.5 B1 ILE 28 D HBDonor
Leu 26 B1.5 B1 ILE 28 D VdWContact
Lys 27 B1.6 B1 HIS 25 D Hydrophobic
Ile 28 B1.7 B1 LEU 62 D Hydrophobic
Ile 28 B1.7 B1 HIS 25 D VdWContact
Ile 28 B1.7 B1 ILE 28 D Hydrophobic
Ile 28 B1.7 B1 ALA 65 D Hydrophobic
Ile 28 B1.7 B1 TYR 61 D Hydrophobic
Ile 28 B1.7 B1 TYR 61 D HBAcceptor
Ile 28 B1.7 B1 TYR 61 D VdWContact
Ile 28 B1.7 B1 LEU 26 D Hydrophobic
Ile 28 B1.7 B1 LEU 26 D HBAcceptor
Ile 28 B1.7 B1 LEU 26 D HBDonor
Ile 28 B1.7 B1 LEU 26 D VdWContact
Leu 29 b1b2.4 30s-loop HIS 25 D Hydrophobic
Asn 30 b1b2.7 30s-loop TYR 61 D Hydrophobic
Asn 30 b1b2.7 30s-loop TYR 61 D VdWContact
Gln 37 B2.1 B2 ALA 65 D Hydrophobic
Gln 37 B2.1 B2 ALA 65 D VdWContact
Ile 38 B2.2 B2 LEU 66 D Hydrophobic
Ile 38 B2.2 B2 LEU 66 D VdWContact
Ile 38 B2.2 B2 ALA 65 D Hydrophobic
Pro 53 b3h.2 50s-loop LEU 66 D Hydrophobic
Ile 58 H.3 Helix LEU 66 D Hydrophobic
Gln 59 H.4 Helix LYS 68 D VdWContact
Tyr 61 H.6 Helix ILE 28 D Hydrophobic
Tyr 61 H.6 Helix LEU 36 D Hydrophobic
Leu 62 H.7 Helix LYS 68 D Hydrophobic
Leu 62 H.7 Helix LEU 66 D Hydrophobic
Leu 62 H.7 Helix GLU 63 D Hydrophobic
Leu 62 H.7 Helix GLU 63 D VdWContact
Ala 65 H.10 Helix LEU 36 D Hydrophobic
Ala 65 H.10 Helix LEU 36 D VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)