Interactions

5CBA | CXCL13_HUMAN — 3b4

Residue contacts: 47
SUMMARY
Protein
CXCL13_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
O43927 View on UniProt
PDB ID
5CBA View on PDB
Method
X-ray
Resolution
2.5 Å
Date
Nov. 4, 2015
Reference
10.1074/JBC.M115.688010 Open DOI
State
Monomer
Chain information
Chemokine chain
F
Partner chain
C,D
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Phe 18 cxb1.10 N-loop PHE 54 C Hydrophobic
Arg 21 cxb1.15 N-loop PRO 96 C HBDonor
Arg 21 cxb1.15 N-loop PRO 96 C VdWContact
Arg 21 cxb1.15 N-loop ILE 52 C Hydrophobic
Arg 21 cxb1.15 N-loop TYR 32 C VdWContact
Arg 21 cxb1.15 N-loop SER 31 C HBDonor
Arg 21 cxb1.15 N-loop SER 31 C VdWContact
Arg 21 cxb1.15 N-loop ASP 97 C Cationic
Arg 21 cxb1.15 N-loop ASP 97 C VdWContact
Arg 21 cxb1.15 N-loop GLU 95 C HBDonor
Arg 21 cxb1.15 N-loop PRO 100 C Hydrophobic
Arg 22 cxb1.16 N-loop ARG 93 D HBDonor
Arg 22 cxb1.16 N-loop ARG 93 D VdWContact
Arg 22 cxb1.16 N-loop TYR 91 D Hydrophobic
Arg 22 cxb1.16 N-loop TYR 91 D VdWContact
Arg 22 cxb1.16 N-loop ASP 95 D Cationic
Arg 22 cxb1.16 N-loop EDO 201 C VdWContact
Ile 24 B1.2 B1 PRO 100 C Hydrophobic
Asp 25 B1.3 B1 TYR 30 D HBDonor
Asp 25 B1.3 B1 TYR 30 D VdWContact
Arg 26 B1.4 B1 TYR 100 C Hydrophobic
Arg 26 B1.4 B1 TYR 100 C VdWContact
Arg 26 B1.4 B1 SER 100 C HBDonor
Arg 26 B1.4 B1 SER 100 C VdWContact
Ile 27 B1.5 B1 TYR 100 C Hydrophobic
Ile 27 B1.5 B1 TYR 100 C HBAcceptor
Ile 27 B1.5 B1 TYR 100 C HBDonor
Ile 27 B1.5 B1 TYR 100 C VdWContact
Ile 29 B1.7 B1 TYR 99 C Hydrophobic
Lys 46 b2b3.2 40s-loop TYR 30 D Hydrophobic
Lys 46 b2b3.2 40s-loop TYR 30 D HBAcceptor
Lys 46 b2b3.2 40s-loop TYR 30 D VdWContact
Lys 46 b2b3.2 40s-loop TRP 32 D Hydrophobic
Lys 46 b2b3.2 40s-loop TRP 32 D VdWContact
Lys 46 b2b3.2 40s-loop ASP 100 C Cationic
Trp 59 H.2 Helix PHE 54 C Hydrophobic
Trp 59 H.2 Helix PHE 54 C VdWContact
Arg 62 H.5 Helix GLU 73 C HBDonor
Arg 62 H.5 Helix GLU 73 C Cationic
Arg 62 H.5 Helix GLU 73 C VdWContact
Arg 62 H.5 Helix ILE 53 C Hydrophobic
Met 63 H.6 Helix PHE 54 C Hydrophobic
Met 63 H.6 Helix TYR 100 C Hydrophobic
Val 66 H.9 Helix ILE 53 C Hydrophobic
Val 66 H.9 Helix ILE 53 C VdWContact
Leu 67 H.10 Helix TYR 99 C Hydrophobic
Leu 67 H.10 Helix TYR 100 C Hydrophobic
CHEMOKINE DIAGRAM
L P R G N G C P R K 30s-loop K N K S 40s-loop D P Q A 50s-loopC-term S L R C R C V Q E S S V F I P R R N-term I Q I R D I F E I I V W K V C V I E W I Q R M M E V L R K
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical