Interactions for 1F9Q — Binding Partner: CXCL4


Structure details

  • Chemokine Chain: D
  • Partner Chain: A,B,C
Download PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

I K A G P H C P T A 30s-loop K N G R 40s-loop D L Q A 50s-loopC-term D G D L Q C L C V K T T S Q V R P R N-term V E L S T I H Q L I A T L L C I K P L Y K K I I K K L L E S

Interactions for this Binding Partner

Download list as CSV
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Asp 305 NTc.Cm5 N-term LYS 14 A HBAcceptor
Asp 305 NTc.Cm5 N-term LYS 14 A VdWContact
Gly 306 NTc.Cm4 N-term LYS 14 A HBAcceptor
Gly 306 NTc.Cm4 N-term LYS 14 A VdWContact
Asp 307 NTc.Cm3 N-term VAL 13 A HBAcceptor
Asp 307 NTc.Cm3 N-term VAL 13 A VdWContact
Asp 307 NTc.Cm3 N-term ILE 51 A VdWContact
Asp 307 NTc.Cm3 N-term LYS 14 A HBAcceptor
Asp 307 NTc.Cm3 N-term LYS 14 A Anionic
Asp 307 NTc.Cm3 N-term LYS 14 A VdWContact
Asp 307 NTc.Cm3 N-term CYS 12 A VdWContact
Asp 307 NTc.Cm3 N-term THR 16 A VdWContact
Asp 307 NTc.Cm3 N-term CYS 52 A Hydrophobic
Asp 307 NTc.Cm3 N-term CYS 52 A HBAcceptor
Asp 307 NTc.Cm3 N-term CYS 52 A VdWContact
Leu 308 NTc.Cm2 N-term LYS 50 A Hydrophobic
Leu 308 NTc.Cm2 N-term ILE 42 A Hydrophobic
Leu 308 NTc.Cm2 N-term LEU 11 A VdWContact
Gln 309 NTc.Cm1 N-term CYS 10 A HBDonor
Gln 309 NTc.Cm1 N-term CYS 10 A VdWContact
Gln 309 NTc.Cm1 N-term VAL 13 A Hydrophobic
Gln 309 NTc.Cm1 N-term VAL 13 A VdWContact
Gln 309 NTc.Cm1 N-term LEU 11 A HBDonor
Gln 309 NTc.Cm1 N-term LEU 11 A VdWContact
Cys 310 CX.1 CX GLN 9 A HBAcceptor
Cys 310 CX.1 CX GLN 9 A VdWContact
Leu 311 CX.4 CX LEU 8 A Hydrophobic
Leu 311 CX.4 CX LEU 8 A VdWContact
Leu 311 CX.4 CX GLN 9 A HBAcceptor
Leu 311 CX.4 CX GLN 9 A VdWContact
Leu 311 CX.4 CX LEU 11 A Hydrophobic
Leu 311 CX.4 CX LEU 11 A VdWContact
Val 313 cxb1.1 N-loop ASP 7 A HBDonor
Val 313 cxb1.1 N-loop ASP 7 A VdWContact
Val 313 cxb1.1 N-loop GLN 9 A Hydrophobic
Lys 314 cxb1.2 N-loop ASP 7 A VdWContact
Thr 316 cxb1.6 N-loop ASP 7 A VdWContact
Thr 325 B1.3 B1 LYS 231 C HBAcceptor
Thr 325 B1.3 B1 LYS 231 C VdWContact
Thr 325 B1.3 B1 ASN 147 B HBDonor
Thr 325 B1.3 B1 ASN 147 B VdWContact
Leu 327 B1.5 B1 VAL 229 C HBAcceptor
Leu 327 B1.5 B1 VAL 229 C HBDonor
Leu 327 B1.5 B1 VAL 229 C VdWContact
Leu 327 B1.5 B1 GLU 228 C VdWContact
Glu 328 B1.6 B1 LEU 227 C VdWContact
Glu 328 B1.6 B1 GLU 228 C Hydrophobic
Val 329 B1.7 B1 LEU 227 C HBAcceptor
Val 329 B1.7 B1 LEU 227 C HBDonor
Val 329 B1.7 B1 LEU 227 C VdWContact
Val 329 B1.7 B1 SER 226 C VdWContact
Val 329 B1.7 B1 LEU 267 C Hydrophobic
Lys 331 b1b2.6 30s-loop THR 225 C HBDonor
Lys 331 b1b2.6 30s-loop THR 225 C VdWContact
Lys 331 b1b2.6 30s-loop LYS 266 C VdWContact
Lys 331 b1b2.6 30s-loop LEU 267 C Hydrophobic
Lys 331 b1b2.6 30s-loop LEU 267 C VdWContact
Ala 332 b1b2.7 30s-loop GLU 269 C VdWContact
Ile 342 B2.3 B2 LEU 8 A Hydrophobic
Asn 347 b2b3.4 40s-loop LYS 146 B VdWContact
Gly 348 b2b3.11 40s-loop LYS 146 B VdWContact
Lys 350 B3.1 B3 LEU 8 A Hydrophobic
Ile 351 B3.2 B3 ASP 7 A Hydrophobic
Ile 351 B3.2 B3 ASP 7 A VdWContact
Cys 352 B3.3 B3 ASP 7 A HBDonor
Cys 352 B3.3 B3 ASP 7 A VdWContact
Tyr 360 H.3 Helix ILE 264 C Hydrophobic
Tyr 360 H.3 Helix LEU 268 C Hydrophobic
Tyr 360 H.3 Helix LEU 268 C VdWContact
Ile 364 H.7 Helix ILE 264 C Hydrophobic
Ile 364 H.7 Helix ILE 264 C VdWContact
Lys 366 H.9 Helix LYS 231 C VdWContact
Leu 367 H.10 Helix LYS 231 C Hydrophobic
Leu 367 H.10 Helix LYS 231 C VdWContact
Leu 367 H.10 Helix VAL 229 C Hydrophobic
Leu 367 H.10 Helix ALA 239 C VdWContact
Leu 368 CT.1 C-term LEU 241 C Hydrophobic
Leu 368 CT.1 C-term LEU 241 C VdWContact
Leu 368 CT.1 C-term TYR 260 C Hydrophobic
Leu 368 CT.1 C-term TYR 260 C VdWContact
Leu 368 CT.1 C-term VAL 229 C Hydrophobic
Leu 368 CT.1 C-term VAL 229 C VdWContact
Leu 368 CT.1 C-term LEU 255 C Hydrophobic
Leu 368 CT.1 C-term LEU 255 C VdWContact
Ser 370 CT.3 C-term LYS 231 C VdWContact
Ser 370 CT.3 C-term ALA 232 C HBAcceptor
Ser 370 CT.3 C-term ALA 232 C VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)