Interactions

5EKI | CCL21_HUMAN — CCL21

Residue contacts: 62
SUMMARY
Protein
CCL21_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
O00585 View on UniProt
PDB ID
5EKI View on PDB
Method
X-ray
Resolution
1.9 Å
Date
Oct. 5, 2016
Reference
10.1021/ACS.BIOCHEM.6B00304 Open DOI
State
Oligomer
Chain information
Chemokine chain
B
Partner chain
C,E
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Asp 7 NTc.Cm1 N-term GLN 74 E VdWContact
Asp 7 NTc.Cm1 N-term PRO 73 E Hydrophobic
Asp 7 NTc.Cm1 N-term ARG 26 E HBAcceptor
Asp 7 NTc.Cm1 N-term ARG 26 E Anionic
Asp 7 NTc.Cm1 N-term ARG 26 E VdWContact
Cys 8 CX.1 CX GLN 74 E HBAcceptor
Cys 8 CX.1 CX GLN 74 E HBDonor
Cys 8 CX.1 CX GLN 74 E VdWContact
Leu 10 cxb1.1 N-loop GLN 74 E Hydrophobic
Leu 10 cxb1.1 N-loop GLN 74 E VdWContact
Leu 10 cxb1.1 N-loop ALA 77 E Hydrophobic
Lys 11 cxb1.2 N-loop PRO 71 E Hydrophobic
Lys 11 cxb1.2 N-loop ASP 68 E Hydrophobic
Lys 11 cxb1.2 N-loop ASP 68 E Cationic
Ser 13 cxb1.6 N-loop PRO 71 E VdWContact
Gln 14 cxb1.7 N-loop LYS 69 E HBDonor
Gln 14 cxb1.7 N-loop LYS 69 E VdWContact
Arg 15 cxb1.8 N-loop THR 70 E Hydrophobic
Arg 15 cxb1.8 N-loop THR 70 E VdWContact
Arg 23 B1.3 B1 GLN 48 C HBDonor
Arg 23 B1.3 B1 GLN 48 C VdWContact
Arg 23 B1.3 B1 ALA 49 C Hydrophobic
Arg 23 B1.3 B1 ARG 46 C HBDonor
Arg 23 B1.3 B1 ARG 46 C VdWContact
Gly 33 b1b2.10 30s-loop ALA 77 E VdWContact
Leu 40 B2.3 B2 PRO 73 E Hydrophobic
Arg 44 b2b3.2 40s-loop SER 47 C VdWContact
Arg 46 b2b3.9 40s-loop ARG 46 E HBAcceptor
Arg 46 b2b3.9 40s-loop ARG 46 E VdWContact
Ser 47 b2b3.10 40s-loop ARG 44 E HBAcceptor
Ser 47 b2b3.10 40s-loop ARG 44 E VdWContact
Gln 48 b2b3.11 40s-loop ARG 46 E HBAcceptor
Gln 48 b2b3.11 40s-loop ARG 46 E VdWContact
Ala 49 b2b3.12 40s-loop ARG 23 E Hydrophobic
Glu 50 B3.1 B3 PRO 73 E Hydrophobic
Glu 50 B3.1 B3 SER 72 E VdWContact
Leu 51 B3.2 B3 PRO 71 E VdWContact
Leu 51 B3.2 B3 THR 70 E Hydrophobic
Leu 51 B3.2 B3 THR 70 E VdWContact
Cys 52 B3.3 B3 PRO 71 E Hydrophobic
Cys 52 B3.3 B3 PRO 71 E HBDonor
Cys 52 B3.3 B3 PRO 71 E VdWContact
Asp 68 CT.1 C-term LYS 11 C Hydrophobic
Asp 68 CT.1 C-term LYS 11 C Anionic
Lys 69 CT.2 C-term GLN 14 C Hydrophobic
Lys 69 CT.2 C-term GLN 14 C HBAcceptor
Lys 69 CT.2 C-term GLN 14 C VdWContact
Thr 70 CT.3 C-term LEU 51 C Hydrophobic
Thr 70 CT.3 C-term ARG 15 C Hydrophobic
Pro 71 CT.4 C-term CYS 52 C Hydrophobic
Pro 71 CT.4 C-term CYS 52 C HBAcceptor
Pro 71 CT.4 C-term CYS 52 C VdWContact
Pro 71 CT.4 C-term LYS 11 C Hydrophobic
Pro 71 CT.4 C-term SER 13 C VdWContact
Pro 73 CT.6 C-term ASP 7 C Hydrophobic
Pro 73 CT.6 C-term GLU 50 C Hydrophobic
Pro 73 CT.6 C-term LEU 40 C Hydrophobic
Gln 74 CT.7 C-term ASP 7 C VdWContact
Gln 74 CT.7 C-term CYS 8 C HBAcceptor
Gln 74 CT.7 C-term CYS 8 C HBDonor
Gln 74 CT.7 C-term CYS 8 C VdWContact
Gln 74 CT.7 C-term LEU 10 C Hydrophobic
CHEMOKINE DIAGRAM
Q E P S L G C S I P 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term Q D C C L K Y S Q R K I P A K N-term K R Y S R V V A I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical