Interactions

5EKI | CCL21_HUMAN — CCL21

Residue contacts: 55
SUMMARY
Protein
CCL21_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
O00585 View on UniProt
PDB ID
5EKI View on PDB
Method
X-ray
Resolution
1.9 Å
Date
Oct. 5, 2016
Reference
10.1021/ACS.BIOCHEM.6B00304 Open DOI
State
Oligomer
Chain information
Chemokine chain
D
Partner chain
A,E
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Gln 6 NTc.Cm2 N-term PRO 76 A Hydrophobic
Asp 7 NTc.Cm1 N-term GLN 74 A VdWContact
Asp 7 NTc.Cm1 N-term ARG 26 A HBAcceptor
Asp 7 NTc.Cm1 N-term ARG 26 A Anionic
Asp 7 NTc.Cm1 N-term ARG 26 A VdWContact
Asp 7 NTc.Cm1 N-term LYS 75 A VdWContact
Asp 7 NTc.Cm1 N-term PRO 73 A Hydrophobic
Cys 8 CX.1 CX GLN 74 A HBAcceptor
Cys 8 CX.1 CX GLN 74 A HBDonor
Cys 8 CX.1 CX GLN 74 A VdWContact
Leu 10 cxb1.1 N-loop GLN 74 A Hydrophobic
Lys 11 cxb1.2 N-loop PRO 71 A Hydrophobic
Lys 11 cxb1.2 N-loop ASP 68 A Hydrophobic
Lys 11 cxb1.2 N-loop ASP 68 A HBDonor
Lys 11 cxb1.2 N-loop ASP 68 A Cationic
Lys 11 cxb1.2 N-loop ASP 68 A VdWContact
Ser 13 cxb1.6 N-loop PRO 71 A VdWContact
Gln 14 cxb1.7 N-loop LYS 69 A HBDonor
Gln 14 cxb1.7 N-loop LYS 69 A VdWContact
Arg 15 cxb1.8 N-loop THR 70 A Hydrophobic
Arg 23 B1.3 B1 ALA 49 E VdWContact
Arg 23 B1.3 B1 SER 47 E VdWContact
Leu 40 B2.3 B2 PRO 73 A Hydrophobic
Arg 46 b2b3.9 40s-loop ARG 46 A VdWContact
Ser 47 b2b3.10 40s-loop ARG 44 A VdWContact
Ala 49 b2b3.12 40s-loop ARG 23 A Hydrophobic
Glu 50 B3.1 B3 PRO 73 A Hydrophobic
Glu 50 B3.1 B3 SER 72 A VdWContact
Leu 51 B3.2 B3 PRO 71 A VdWContact
Cys 52 B3.3 B3 PRO 71 A Hydrophobic
Cys 52 B3.3 B3 PRO 71 A HBDonor
Cys 52 B3.3 B3 PRO 71 A VdWContact
Asp 68 CT.1 C-term LYS 11 E Anionic
Asp 68 CT.1 C-term LYS 11 E VdWContact
Lys 69 CT.2 C-term GLN 14 E HBAcceptor
Lys 69 CT.2 C-term GLN 14 E VdWContact
Lys 69 CT.2 C-term SER 13 E VdWContact
Thr 70 CT.3 C-term ARG 15 E Hydrophobic
Pro 71 CT.4 C-term LYS 11 E Hydrophobic
Pro 71 CT.4 C-term SER 13 E VdWContact
Pro 71 CT.4 C-term CYS 52 E Hydrophobic
Pro 71 CT.4 C-term CYS 52 E HBAcceptor
Pro 71 CT.4 C-term CYS 52 E VdWContact
Pro 73 CT.6 C-term ASP 7 E Hydrophobic
Pro 73 CT.6 C-term LEU 40 E Hydrophobic
Pro 73 CT.6 C-term GLU 50 E Hydrophobic
Gln 74 CT.7 C-term LEU 10 E Hydrophobic
Gln 74 CT.7 C-term LEU 10 E VdWContact
Gln 74 CT.7 C-term CYS 8 E HBAcceptor
Gln 74 CT.7 C-term CYS 8 E HBDonor
Gln 74 CT.7 C-term CYS 8 E VdWContact
Lys 75 CT.8 C-term ASP 7 E VdWContact
Lys 75 CT.8 C-term ALA 5 E HBDonor
Lys 75 CT.8 C-term ALA 5 E VdWContact
Pro 76 CT.44 C-term GLY 33 E VdWContact
CHEMOKINE DIAGRAM
Q E P S L G C S I P 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term Q D C C L K Y S Q R K I P A K N-term K R Y S R V V A I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical