Interactions for 5D65 — Binding Partner: CCL3
Structure details
- PDB ID: 5D65 open_in_new
- Protein: CCL3_HUMAN
- Organism: Homo sapiens
- UniProt ID: P10147 open_in_new
- Method: X-ray
- Resolution: 3.1 Å
- Date: April 20, 2016
- Reference: 10.1073/PNAS.1523981113 open_in_new
- State: Oligomer
- Chemokine Chain: A
- Partner Chain: B,C,D,E
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Ser 2 | NTc.Cm9 | N-term | GLN 49 | C | HBAcceptor |
| Ser 2 | NTc.Cm9 | N-term | GLN 49 | C | VdWContact |
| Leu 3 | NTc.Cm8 | N-term | ALA 10 | B | Hydrophobic |
| Leu 3 | NTc.Cm8 | N-term | PRO 8 | C | Hydrophobic |
| Leu 3 | NTc.Cm8 | N-term | PRO 8 | C | VdWContact |
| Leu 3 | NTc.Cm8 | N-term | ALA 10 | C | Hydrophobic |
| Ala 4 | NTc.Cm7 | N-term | PRO 8 | C | HBDonor |
| Ala 4 | NTc.Cm7 | N-term | PRO 8 | C | VdWContact |
| Ala 4 | NTc.Cm7 | N-term | ALA 10 | C | VdWContact |
| Ala 5 | NTc.Cm6 | N-term | PHE 29 | C | Hydrophobic |
| Pro 8 | NTc.Cm3 | N-term | LEU 3 | C | VdWContact |
| Thr 9 | NTc.Cm2 | N-term | ALA 4 | C | Hydrophobic |
| Thr 9 | NTc.Cm2 | N-term | ALA 4 | C | VdWContact |
| Ala 26 | B1.3 | B1 | ARG 46 | B | VdWContact |
| Asp 27 | B1.4 | B1 | ARG 46 | B | HBAcceptor |
| Asp 27 | B1.4 | B1 | ARG 46 | B | Anionic |
| Asp 27 | B1.4 | B1 | ARG 46 | B | VdWContact |
| Asp 27 | B1.4 | B1 | ARG 48 | B | HBAcceptor |
| Asp 27 | B1.4 | B1 | ARG 48 | B | Anionic |
| Asp 27 | B1.4 | B1 | ARG 48 | B | VdWContact |
| Tyr 28 | B1.5 | B1 | ARG 46 | B | Hydrophobic |
| Tyr 28 | B1.5 | B1 | ARG 48 | B | HBAcceptor |
| Tyr 28 | B1.5 | B1 | ARG 48 | B | VdWContact |
| Ser 33 | b1b2.9 | 30s-loop | TYR 15 | B | HBDonor |
| Ser 33 | b1b2.9 | 30s-loop | TYR 15 | B | VdWContact |
| Val 63 | H.7 | Helix | PHE 24 | B | Hydrophobic |
| Ser 64 | H.8 | Helix | PHE 24 | B | VdWContact |
| Leu 66 | H.10 | Helix | ARG 46 | B | HBAcceptor |
| Leu 66 | H.10 | Helix | ARG 46 | B | VdWContact |
| Glu 67 | CT.1 | C-term | THR 44 | B | HBAcceptor |
| Glu 67 | CT.1 | C-term | THR 44 | B | VdWContact |
| Glu 67 | CT.1 | C-term | PHE 24 | B | Hydrophobic |
| Glu 67 | CT.1 | C-term | PHE 24 | B | VdWContact |
| Glu 67 | CT.1 | C-term | ARG 46 | B | Hydrophobic |
| Glu 67 | CT.1 | C-term | ARG 46 | B | HBAcceptor |
| Glu 67 | CT.1 | C-term | ARG 46 | B | VdWContact |
| Glu 67 | CT.1 | C-term | LYS 45 | B | VdWContact |
| Leu 68 | CT.2 | C-term | PHE 24 | B | Hydrophobic |
| Leu 68 | CT.2 | C-term | ASN 23 | B | Hydrophobic |
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