Interactions for 7RKM — Binding Partner: US28


Structure details

  • Chemokine Chain: L
  • Partner Chain: R
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Chemokine diagram

K R A I I L E T R 30s-loop A D P 40s-loop V K D A 50s-loopC-term H H G V T K C N I T C S K M T S K I P V A L L I H Y Q N-term G C S A Q N Q Q H R L F C W Q E K M Q H L D R Q

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
His 2 NTc.Cm12 N-term TYR 40 R Hydrophobic
His 2 NTc.Cm12 N-term TYR 40 R VdWContact
His 2 NTc.Cm12 N-term PHE 281 R Hydrophobic
His 2 NTc.Cm12 N-term PHE 111 R Hydrophobic
His 2 NTc.Cm12 N-term TRP 89 R Hydrophobic
His 2 NTc.Cm12 N-term TRP 89 R PiStacking
His 2 NTc.Cm12 N-term TYR 112 R HBAcceptor
His 2 NTc.Cm12 N-term TYR 112 R VdWContact
His 3 NTc.Cm11 N-term LEU 248 R Hydrophobic
His 3 NTc.Cm11 N-term LEU 273 R Hydrophobic
His 3 NTc.Cm11 N-term LYS 270 R VdWContact
His 3 NTc.Cm11 N-term GLU 277 R VdWContact
Gly 4 NTc.Cm10 N-term ILE 274 R VdWContact
Val 5 NTc.Cm9 N-term LEU 93 R Hydrophobic
Val 5 NTc.Cm9 N-term LEU 93 R VdWContact
Val 5 NTc.Cm9 N-term TRP 89 R Hydrophobic
Val 5 NTc.Cm9 N-term TYR 92 R Hydrophobic
Lys 7 NTc.Cm7 N-term GLN 172 R Hydrophobic
Lys 7 NTc.Cm7 N-term TYR 92 R HBDonor
Lys 7 NTc.Cm7 N-term TYR 92 R CationPi
Lys 7 NTc.Cm7 N-term TYR 92 R VdWContact
Asn 9 NTc.Cm5 N-term PHE 25 R HBAcceptor
Asn 9 NTc.Cm5 N-term PHE 25 R VdWContact
Ile 10 NTc.Cm4 N-term PRO 22 R Hydrophobic
Ile 10 NTc.Cm4 N-term VAL 24 R Hydrophobic
Ile 10 NTc.Cm4 N-term VAL 24 R VdWContact
Thr 11 NTc.Cm3 N-term CYS 23 R HBAcceptor
Thr 11 NTc.Cm3 N-term CYS 23 R VdWContact
Thr 11 NTc.Cm3 N-term PRO 22 R VdWContact
Thr 16 CX.3 CX ASP 17 R Hydrophobic
Ile 19 cxb1.1 N-loop TYR 16 R Hydrophobic
Ala 32 B1.4 B1 GLN 172 R VdWContact
Ala 32 B1.4 B1 MET 174 R Hydrophobic
Ala 32 B1.4 B1 MET 174 R VdWContact
Ser 33 B1.5 B1 CYS 173 R HBDonor
Ser 33 B1.5 B1 CYS 173 R VdWContact
Ser 33 B1.5 B1 GLN 172 R VdWContact
Cys 34 B1.6 B1 TYR 177 R VdWContact
Gly 35 B1.7 B1 THR 175 R VdWContact
Gly 35 B1.7 B1 MET 174 R VdWContact
Ile 40 b1b2.12 30s-loop PRO 22 R Hydrophobic
Ile 40 b1b2.12 30s-loop PRO 22 R VdWContact
Arg 47 B2.3 B2 TYR 16 R VdWContact
Phe 49 B2.5 B2 THR 21 R Hydrophobic
Phe 49 B2.5 B2 TYR 16 R Hydrophobic
Phe 49 B2.5 B2 TYR 16 R VdWContact
Cys 50 B2.6 B2 ALA 20 R HBDonor
Cys 50 B2.6 B2 ALA 20 R VdWContact
Cys 50 B2.6 B2 PRO 22 R VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)