Interactions for 5EKI — Binding Partner: CCL21


Structure details

  • Chemokine Chain: C
  • Partner Chain: B,F
Download Full PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

E P S L G C S I P A 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term D C C L K Y S Q R K I P A K V N-term Q K R Y S R V I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P
Pick color:
 
 
 
 
 
 
 
 
 
 
 
 


Interactions for this Binding Partner

Download list in excel
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Asp 7 62 N-term PRO 73 B Hydrophobic
Asp 7 62 N-term GLN 74 B VdWContact
Cys 8 63 CX GLN 74 B HBAcceptor
Cys 8 63 CX GLN 74 B HBDonor
Cys 8 63 CX GLN 74 B VdWContact
Leu 10 68 N-loop GLN 74 B Hydrophobic
Lys 11 69 N-loop PRO 71 B Hydrophobic
Lys 11 69 N-loop ASP 68 B Hydrophobic
Lys 11 69 N-loop ASP 68 B Cationic
Ser 13 71 N-loop PRO 71 B VdWContact
Gln 14 72 N-loop LYS 69 B Hydrophobic
Gln 14 72 N-loop LYS 69 B HBDonor
Gln 14 72 N-loop LYS 69 B VdWContact
Arg 15 73 N-loop THR 70 B Hydrophobic
Arg 23 84 B1 SER 47 F VdWContact
Arg 23 84 B1 ALA 49 F Hydrophobic
Arg 26 87 B1 ASP 7 F HBDonor
Arg 26 87 B1 ASP 7 F Cationic
Arg 26 87 B1 ASP 7 F VdWContact
Leu 40 102 B2 PRO 73 B Hydrophobic
Arg 44 106 40s-loop SER 47 F HBDonor
Arg 44 106 40s-loop SER 47 F VdWContact
Arg 46 108 40s-loop ARG 23 B HBAcceptor
Arg 46 108 40s-loop ARG 23 B VdWContact
Ser 47 109 40s-loop ARG 44 B VdWContact
Gln 48 113 40s-loop ARG 23 B HBAcceptor
Gln 48 113 40s-loop ARG 23 B VdWContact
Ala 49 114 40s-loop ARG 23 B Hydrophobic
Glu 50 115 B3 PRO 73 B Hydrophobic
Leu 51 116 B3 THR 70 B Hydrophobic
Cys 52 117 B3 PRO 71 B Hydrophobic
Cys 52 117 B3 PRO 71 B HBDonor
Cys 52 117 B3 PRO 71 B VdWContact
Asp 68 133 Helix LYS 11 F Hydrophobic
Asp 68 133 Helix LYS 11 F HBAcceptor
Asp 68 133 Helix LYS 11 F Anionic
Asp 68 133 Helix LYS 11 F VdWContact
Lys 69 134 Helix GLN 14 F HBAcceptor
Lys 69 134 Helix GLN 14 F VdWContact
Lys 69 134 Helix SER 13 F VdWContact
Thr 70 135 Helix ARG 15 F Hydrophobic
Thr 70 135 Helix LEU 51 F VdWContact
Pro 71 136 C-term SER 13 F VdWContact
Pro 71 136 C-term LYS 11 F Hydrophobic
Pro 71 136 C-term LEU 51 F VdWContact
Pro 71 136 C-term CYS 52 F Hydrophobic
Pro 71 136 C-term CYS 52 F HBAcceptor
Pro 71 136 C-term CYS 52 F VdWContact
Ser 72 137 C-term GLU 50 F VdWContact
Pro 73 138 C-term ASP 7 F Hydrophobic
Pro 73 138 C-term GLU 50 F Hydrophobic
Pro 73 138 C-term LEU 40 F Hydrophobic
Pro 73 138 C-term LEU 40 F VdWContact
Gln 74 139 C-term LEU 10 F Hydrophobic
Gln 74 139 C-term CYS 8 F HBAcceptor
Gln 74 139 C-term CYS 8 F HBDonor
Gln 74 139 C-term CYS 8 F VdWContact
Pro 76 176 C-term GLY 33 F VdWContact
Pro 76 176 C-term CYS 8 F Hydrophobic

Interaction pattern search
Search complexes with similar interaction patterns:

Specify the minimum similarity (0.00 no similarity, 1.00 identical)