Interactions for 5EKI — Binding Partner: CCL21


Structure details

  • Chemokine Chain: D
  • Partner Chain: A,E
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Chemokine diagram

E P S L G C S I P A 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term Q D C C L K Y S Q R K I P A K V N-term Q K R Y S R V I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Gln 6 61 N-term PRO 76 A Hydrophobic
Asp 7 62 N-term GLN 74 A VdWContact
Asp 7 62 N-term ARG 26 A HBAcceptor
Asp 7 62 N-term ARG 26 A Anionic
Asp 7 62 N-term ARG 26 A VdWContact
Asp 7 62 N-term LYS 75 A VdWContact
Asp 7 62 N-term PRO 73 A Hydrophobic
Cys 8 63 CX GLN 74 A HBAcceptor
Cys 8 63 CX GLN 74 A HBDonor
Cys 8 63 CX GLN 74 A VdWContact
Leu 10 68 N-loop GLN 74 A Hydrophobic
Lys 11 69 N-loop PRO 71 A Hydrophobic
Lys 11 69 N-loop ASP 68 A Hydrophobic
Lys 11 69 N-loop ASP 68 A HBDonor
Lys 11 69 N-loop ASP 68 A Cationic
Lys 11 69 N-loop ASP 68 A VdWContact
Ser 13 71 N-loop PRO 71 A VdWContact
Gln 14 72 N-loop LYS 69 A HBDonor
Gln 14 72 N-loop LYS 69 A VdWContact
Arg 15 73 N-loop THR 70 A Hydrophobic
Arg 23 84 B1 ALA 49 E VdWContact
Arg 23 84 B1 SER 47 E VdWContact
Leu 40 102 B2 PRO 73 A Hydrophobic
Arg 46 108 40s-loop ARG 46 A VdWContact
Ser 47 109 40s-loop ARG 44 A VdWContact
Ala 49 114 40s-loop ARG 23 A Hydrophobic
Glu 50 115 B3 PRO 73 A Hydrophobic
Glu 50 115 B3 SER 72 A VdWContact
Leu 51 116 B3 PRO 71 A VdWContact
Cys 52 117 B3 PRO 71 A Hydrophobic
Cys 52 117 B3 PRO 71 A HBDonor
Cys 52 117 B3 PRO 71 A VdWContact
Asp 68 133 Helix LYS 11 E Anionic
Asp 68 133 Helix LYS 11 E VdWContact
Lys 69 134 Helix GLN 14 E HBAcceptor
Lys 69 134 Helix GLN 14 E VdWContact
Lys 69 134 Helix SER 13 E VdWContact
Thr 70 135 Helix ARG 15 E Hydrophobic
Pro 71 136 C-term LYS 11 E Hydrophobic
Pro 71 136 C-term SER 13 E VdWContact
Pro 71 136 C-term CYS 52 E Hydrophobic
Pro 71 136 C-term CYS 52 E HBAcceptor
Pro 71 136 C-term CYS 52 E VdWContact
Pro 73 138 C-term ASP 7 E Hydrophobic
Pro 73 138 C-term LEU 40 E Hydrophobic
Pro 73 138 C-term GLU 50 E Hydrophobic
Gln 74 139 C-term LEU 10 E Hydrophobic
Gln 74 139 C-term LEU 10 E VdWContact
Gln 74 139 C-term CYS 8 E HBAcceptor
Gln 74 139 C-term CYS 8 E HBDonor
Gln 74 139 C-term CYS 8 E VdWContact
Lys 75 140 C-term ASP 7 E VdWContact
Lys 75 140 C-term ALA 5 E HBDonor
Lys 75 140 C-term ALA 5 E VdWContact
Pro 76 176 C-term GLY 33 E VdWContact

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