Interactions for 5EKI — Binding Partner: CCL21


Structure details

  • Chemokine Chain: E
  • Partner Chain: B,D
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Chemokine diagram

E P S L G C S I P A 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term A Q D C C L K Y S Q R K I P A K V N-term Q K R Y S R V I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P A
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ala 5 60 N-term LYS 75 D HBAcceptor
Ala 5 60 N-term LYS 75 D VdWContact
Asp 7 62 N-term LYS 75 D VdWContact
Asp 7 62 N-term PRO 73 D Hydrophobic
Cys 8 63 CX GLN 74 D HBAcceptor
Cys 8 63 CX GLN 74 D HBDonor
Cys 8 63 CX GLN 74 D VdWContact
Leu 10 68 N-loop GLN 74 D Hydrophobic
Leu 10 68 N-loop GLN 74 D VdWContact
Lys 11 69 N-loop ASP 68 D Cationic
Lys 11 69 N-loop ASP 68 D VdWContact
Lys 11 69 N-loop PRO 71 D Hydrophobic
Ser 13 71 N-loop LYS 69 D VdWContact
Ser 13 71 N-loop PRO 71 D VdWContact
Gln 14 72 N-loop LYS 69 D HBDonor
Gln 14 72 N-loop LYS 69 D VdWContact
Arg 15 73 N-loop THR 70 D Hydrophobic
Arg 23 84 B1 ALA 49 B Hydrophobic
Arg 26 87 B1 ASP 7 B HBDonor
Arg 26 87 B1 ASP 7 B Cationic
Arg 26 87 B1 ASP 7 B VdWContact
Gly 33 94 30s-loop PRO 76 D VdWContact
Leu 40 102 B2 PRO 73 D Hydrophobic
Arg 44 106 40s-loop SER 47 B HBDonor
Arg 44 106 40s-loop SER 47 B VdWContact
Arg 46 108 40s-loop ARG 46 B HBDonor
Arg 46 108 40s-loop ARG 46 B VdWContact
Arg 46 108 40s-loop GLN 48 B HBDonor
Arg 46 108 40s-loop GLN 48 B VdWContact
Ser 47 109 40s-loop ARG 23 D VdWContact
Ala 49 114 40s-loop ARG 23 D VdWContact
Glu 50 115 B3 PRO 73 D Hydrophobic
Cys 52 117 B3 PRO 71 D Hydrophobic
Cys 52 117 B3 PRO 71 D HBDonor
Cys 52 117 B3 PRO 71 D VdWContact
Asp 68 133 Helix LYS 11 B Hydrophobic
Asp 68 133 Helix LYS 11 B Anionic
Lys 69 134 Helix GLN 14 B HBAcceptor
Lys 69 134 Helix GLN 14 B VdWContact
Thr 70 135 Helix LEU 51 B Hydrophobic
Thr 70 135 Helix LEU 51 B VdWContact
Thr 70 135 Helix ARG 15 B Hydrophobic
Thr 70 135 Helix ARG 15 B VdWContact
Pro 71 136 C-term LYS 11 B Hydrophobic
Pro 71 136 C-term CYS 52 B Hydrophobic
Pro 71 136 C-term CYS 52 B HBAcceptor
Pro 71 136 C-term CYS 52 B VdWContact
Pro 71 136 C-term LEU 51 B VdWContact
Pro 71 136 C-term SER 13 B VdWContact
Ser 72 137 C-term GLU 50 B VdWContact
Pro 73 138 C-term LEU 40 B Hydrophobic
Pro 73 138 C-term GLU 50 B Hydrophobic
Pro 73 138 C-term ASP 7 B Hydrophobic
Gln 74 139 C-term CYS 8 B HBAcceptor
Gln 74 139 C-term CYS 8 B HBDonor
Gln 74 139 C-term CYS 8 B VdWContact
Gln 74 139 C-term LEU 10 B Hydrophobic
Gln 74 139 C-term LEU 10 B VdWContact
Gln 74 139 C-term ASP 7 B VdWContact
Ala 77 142 C-term LEU 10 B Hydrophobic
Ala 77 142 C-term GLY 33 B VdWContact

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