Interactions for 5EKI — Binding Partner: CCL21


Structure details

  • Chemokine Chain: F
  • Partner Chain: A,C
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Chemokine diagram

E P S L G C S I P A 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term D C C L K Y S Q R K I P A K V N-term Q K R Y S R V I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Asp 7 62 N-term PRO 73 C Hydrophobic
Asp 7 62 N-term ARG 26 C HBAcceptor
Asp 7 62 N-term ARG 26 C Anionic
Asp 7 62 N-term ARG 26 C VdWContact
Cys 8 63 CX GLN 74 C HBAcceptor
Cys 8 63 CX GLN 74 C HBDonor
Cys 8 63 CX GLN 74 C VdWContact
Cys 8 63 CX PRO 76 C Hydrophobic
Leu 10 68 N-loop GLN 74 C Hydrophobic
Lys 11 69 N-loop ASP 68 C Hydrophobic
Lys 11 69 N-loop ASP 68 C HBDonor
Lys 11 69 N-loop ASP 68 C Cationic
Lys 11 69 N-loop ASP 68 C VdWContact
Lys 11 69 N-loop PRO 71 C Hydrophobic
Ser 13 71 N-loop LYS 69 C VdWContact
Ser 13 71 N-loop PRO 71 C VdWContact
Gln 14 72 N-loop LYS 69 C HBDonor
Gln 14 72 N-loop LYS 69 C VdWContact
Arg 15 73 N-loop THR 70 C Hydrophobic
Arg 23 84 B1 ALA 49 A Hydrophobic
Arg 26 87 B1 ASP 7 A HBDonor
Arg 26 87 B1 ASP 7 A Cationic
Arg 26 87 B1 ASP 7 A VdWContact
Gly 33 94 30s-loop PRO 76 C VdWContact
Leu 40 102 B2 PRO 73 C Hydrophobic
Leu 40 102 B2 PRO 73 C VdWContact
Arg 44 106 40s-loop SER 47 A VdWContact
Arg 46 108 40s-loop ARG 46 A VdWContact
Ser 47 109 40s-loop ARG 44 C HBAcceptor
Ser 47 109 40s-loop ARG 44 C VdWContact
Ser 47 109 40s-loop ARG 23 C VdWContact
Ala 49 114 40s-loop ARG 23 C Hydrophobic
Glu 50 115 B3 SER 72 C VdWContact
Glu 50 115 B3 PRO 73 C Hydrophobic
Leu 51 116 B3 THR 70 C VdWContact
Leu 51 116 B3 PRO 71 C VdWContact
Cys 52 117 B3 PRO 71 C Hydrophobic
Cys 52 117 B3 PRO 71 C HBDonor
Cys 52 117 B3 PRO 71 C VdWContact
Asp 68 133 Helix LYS 11 A Hydrophobic
Asp 68 133 Helix LYS 11 A Anionic
Asp 68 133 Helix LYS 11 A VdWContact
Lys 69 134 Helix GLN 14 A HBAcceptor
Lys 69 134 Helix GLN 14 A VdWContact
Lys 69 134 Helix ARG 15 A VdWContact
Thr 70 135 Helix LEU 51 A Hydrophobic
Pro 71 136 C-term LEU 51 A VdWContact
Pro 71 136 C-term CYS 52 A Hydrophobic
Pro 71 136 C-term CYS 52 A HBAcceptor
Pro 71 136 C-term CYS 52 A VdWContact
Pro 71 136 C-term LYS 11 A Hydrophobic
Pro 71 136 C-term SER 13 A VdWContact
Ser 72 137 C-term GLU 50 A VdWContact
Pro 73 138 C-term LEU 40 A Hydrophobic
Pro 73 138 C-term ASP 7 A Hydrophobic
Pro 73 138 C-term ASP 7 A VdWContact
Pro 73 138 C-term GLU 50 A Hydrophobic
Gln 74 139 C-term ASP 7 A VdWContact
Gln 74 139 C-term CYS 8 A HBAcceptor
Gln 74 139 C-term CYS 8 A HBDonor
Gln 74 139 C-term CYS 8 A VdWContact
Gln 74 139 C-term LEU 10 A Hydrophobic
Lys 75 140 C-term ASP 7 A Cationic

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