Interactions for 5L2U — Binding Partner: CCL5


Structure details

  • Chemokine Chain: E
  • Partner Chain: F
Download Full PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopC-term S S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
Pick color:
 
 
 
 
 
 
 
 
 
 
 
 


Interactions for this Binding Partner

Download list in excel
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ser 4 57 N-term ARG 47 F VdWContact
Ser 4 57 N-term GLN 48 F HBAcceptor
Ser 4 57 N-term GLN 48 F VdWContact
Ser 5 58 N-term GLN 48 F VdWContact
Asp 6 59 N-term GLN 48 F HBDonor
Asp 6 59 N-term GLN 48 F VdWContact
Asp 6 59 N-term CYS 50 F HBAcceptor
Asp 6 59 N-term CYS 50 F VdWContact
Thr 7 60 N-term VAL 40 F Hydrophobic
Thr 7 60 N-term PRO 9 F Hydrophobic
Thr 8 61 N-term PHE 12 F Hydrophobic
Thr 8 61 N-term PHE 12 F VdWContact
Thr 8 61 N-term CYS 10 F HBAcceptor
Thr 8 61 N-term CYS 10 F HBDonor
Thr 8 61 N-term CYS 10 F VdWContact
Pro 9 62 N-term THR 7 F Hydrophobic
Cys 10 63 CX THR 7 F VdWContact
Cys 10 63 CX THR 8 F HBAcceptor
Cys 10 63 CX THR 8 F HBDonor
Cys 10 63 CX THR 8 F VdWContact
Phe 12 68 N-loop THR 8 F Hydrophobic
Phe 12 68 N-loop THR 8 F VdWContact
Phe 12 68 N-loop LYS 33 F Hydrophobic
Lys 33 94 30s-loop PHE 12 F Hydrophobic
Lys 33 94 30s-loop PHE 12 F VdWContact
Val 40 102 B2 THR 7 F Hydrophobic
Arg 47 114 40s-loop ASP 6 F Cationic
Gln 48 115 B3 THR 7 F Hydrophobic
Gln 48 115 B3 THR 7 F HBAcceptor
Gln 48 115 B3 THR 7 F VdWContact
Gln 48 115 B3 ASP 6 F VdWContact
Cys 50 117 B3 SER 5 F HBDonor
Cys 50 117 B3 SER 5 F VdWContact

Interaction pattern search
Search complexes with similar interaction patterns:

Specify the minimum similarity (0.00 no similarity, 1.00 identical)