Interactions for 1CM9 — Binding Partner: CXCL2
Structure details
- PDB ID: 1CM9 open_in_new
- Protein: CXCL2_HHV8P
- Organism: Human herpesvirus 8 type P (isolate GK18)
- UniProt ID: Q98157 open_in_new
- Method: X-ray
- Resolution: 2.1 Å
- Date: June 24, 1999
- Reference: 10.1021/BI001166F open_in_new
- State: Dimer
- Chemokine Chain: A
- Partner Chain: B
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Ser 7 | NTc.Cm7 | N-term | GLN 19 | B | VdWContact |
| His 9 | NTc.Cm5 | N-term | VAL 53 | B | Hydrophobic |
| His 9 | NTc.Cm5 | N-term | GLY 17 | B | VdWContact |
| His 9 | NTc.Cm5 | N-term | TYR 18 | B | HBDonor |
| His 9 | NTc.Cm5 | N-term | TYR 18 | B | VdWContact |
| Arg 10 | NTc.Cm4 | N-term | GLN 52 | B | VdWContact |
| Pro 11 | NTc.Cm3 | N-term | LYS 13 | B | Hydrophobic |
| Pro 11 | NTc.Cm3 | N-term | CYS 54 | B | VdWContact |
| Pro 11 | NTc.Cm3 | N-term | ILE 44 | B | Hydrophobic |
| Pro 11 | NTc.Cm3 | N-term | GLN 52 | B | Hydrophobic |
| Asp 12 | NTc.Cm2 | N-term | LYS 13 | B | VdWContact |
| Asp 12 | NTc.Cm2 | N-term | LEU 16 | B | VdWContact |
| Asp 12 | NTc.Cm2 | N-term | CYS 14 | B | HBAcceptor |
| Asp 12 | NTc.Cm2 | N-term | CYS 14 | B | HBDonor |
| Asp 12 | NTc.Cm2 | N-term | CYS 14 | B | VdWContact |
| Lys 13 | NTc.Cm1 | N-term | LYS 13 | B | Hydrophobic |
| Lys 13 | NTc.Cm1 | N-term | PRO 11 | B | Hydrophobic |
| Cys 14 | CX.1 | CX | ASP 12 | B | HBAcceptor |
| Cys 14 | CX.1 | CX | ASP 12 | B | HBDonor |
| Cys 14 | CX.1 | CX | ASP 12 | B | VdWContact |
| Cys 14 | CX.1 | CX | CYS 14 | B | Hydrophobic |
| Leu 16 | cxb1.1 | N-loop | LEU 37 | B | Hydrophobic |
| Leu 16 | cxb1.1 | N-loop | ASP 12 | B | Hydrophobic |
| Tyr 18 | cxb1.5 | N-loop | HIS 9 | B | VdWContact |
| Gln 19 | cxb1.6 | N-loop | TRP 8 | B | VdWContact |
| Gln 19 | cxb1.6 | N-loop | HIS 9 | B | Hydrophobic |
| Gln 19 | cxb1.6 | N-loop | HIS 9 | B | VdWContact |
| Arg 21 | cxb1.8 | N-loop | TRP 8 | B | Cationic |
| Ser 35 | b1b2.6 | 30s-loop | LEU 16 | B | VdWContact |
| Leu 37 | b1b2.10 | 30s-loop | LEU 16 | B | Hydrophobic |
| Leu 37 | b1b2.10 | 30s-loop | LEU 16 | B | VdWContact |
| Ser 39 | b1b2.13 | 30s-loop | SER 39 | B | VdWContact |
| Ile 44 | B2.3 | B2 | PRO 11 | B | Hydrophobic |
| Ile 44 | B2.3 | B2 | PRO 11 | B | VdWContact |
| Gln 52 | B3.1 | B3 | PRO 11 | B | Hydrophobic |
| Gln 52 | B3.1 | B3 | ARG 10 | B | VdWContact |
| Cys 54 | B3.3 | B3 | PRO 11 | B | VdWContact |
| Cys 54 | B3.3 | B3 | HIS 9 | B | Hydrophobic |
| Cys 54 | B3.3 | B3 | HIS 9 | B | HBDonor |
| Cys 54 | B3.3 | B3 | HIS 9 | B | VdWContact |
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