Protein

CXCL13_MOUSE

SUMMARY
Gene
CXCL13_MOUSE
Full name
C-X-C motif chemokine 13
Organism
Mus musculus
Subfamily
CXCL
Sequence type
Wild-type
UniProt ID
O55038 Open UniProt
IUPHAR ID
4466 Open Guide to Pharmacology
GtoP partners
-
DIAGRAM
T P P G N G C P K T 30s-loop K M K K 40s-loop N P R A 50s-loopC-term M R L S T A T L L L L L A S C L S P G H G I L E A H Y T N L K C R C S G V I S T V V G L N N-term V Q I R D I I E V V I W T V C I V K W L Q R L L R H V Q S K S L S S T P Q A P V S K R R A A
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SEQUENCE

Residues are colour-coded by structural context. Hover to view sequence and CCN numbering.

N-term
M
R
L
S
T
A
T
L
L
L
10
 
L
L
A
S
C
L
S
P
G
H
20
 
G
I
L
E
A
H
Y
T
N
L
30
  CX N-loop
K
C
R
C
S
G
V
I
S
T
40
  B1
V
V
G
L
N
I
I
D
R
I
50
  30s-loop
Q
V
T
P
P
G
N
G
C
P
60
  B2 40s-loop
K
T
E
V
V
I
W
T
K
M
70
  B3 50s-loop
K
K
V
I
C
V
N
P
R
A
80
Helix
K
W
L
Q
R
L
L
R
H
V
90
C-term
Q
S
K
S
L
S
S
T
P
Q
100
 
A
P
V
S
K
R
R
A
A
109
STRUCTURES

Experimental structures

PDB Method Resolution State Publication date Reference
5L7M - A Nmr None Monomer 2017-06-21 10.1098/RSOB.170133 open_in_new
5IZB - A Nmr None Monomer 2017-04-05 -

No predicted structures or complexes found for this protein.

SEQUENCE ALIGNMENT

Canonical residues are compared against each available structure at matched CCN positions.

Position NTc.Cm31 NTc.Cm30 NTc.Cm29 NTc.Cm28 NTc.Cm27 NTc.Cm26 NTc.Cm25 NTc.Cm24 NTc.Cm23 NTc.Cm22 NTc.Cm21 NTc.Cm20 NTc.Cm19 NTc.Cm18 NTc.Cm17 NTc.Cm16 NTc.Cm15 NTc.Cm14 NTc.Cm13 NTc.Cm12 NTc.Cm11 NTc.Cm10 NTc.Cm9 NTc.Cm8 NTc.Cm7 NTc.Cm6 NTc.Cm5 NTc.Cm4 NTc.Cm3 NTc.Cm2 NTc.Cm1 CX.1 CX.4 CX.5 cxb1.1 cxb1.2 cxb1.5 cxb1.6 cxb1.7 cxb1.8 cxb1.10 cxb1.11 cxb1.14 cxb1.15 cxb1.16 B1.1 B1.2 B1.3 B1.4 B1.5 B1.6 B1.7 b1b2.4 b1b2.6 b1b2.7 b1b2.8 b1b2.9 b1b2.10 b1b2.12 b1b2.13 b1b2.14 b1b2.16 B2.1 B2.2 B2.3 B2.4 B2.5 B2.6 b2b3.2 b2b3.4 b2b3.11 b2b3.12 B3.1 B3.2 B3.3 B3.4 b3h.1 b3h.2 b3h.3 b3h.4 H.1 H.2 H.3 H.4 H.5 H.6 H.7 H.8 H.9 H.10 CT.1 CT.2 CT.3 CT.4 CT.5 CT.6 CT.7 CT.8 CT.9 CT.10 CT.11 CT.12 CT.13 CT.14 CT.15 CT.16 CT.17 CT.18 CT.19
Canonical sequence M R L S T A T L L L L L A S C L S P G H G I L E A H Y T N L K C R C S G V I S T V V G L N I I D R I Q V T P P G N G C P K T E V V I W T K M K K V I C V N P R A K W L Q R L L R H V Q S K S L S S T P Q A P V S K R R A A
5L7M - - - - - - - - - - - - - - - - - - - - - I L E A H Y T N L K C R C S G V I S T V V G L N I I D R I Q V T P P G N G C P K T E V V I W T K M K K V I C V N P R A K W L Q R L L R H V Q S K S L S S T P Q A P V S K R R A A
5IZB M - - - - - - - - - - - - - - - - - - - - I L E A H Y T N L K C R C S G V I S T V V G L N I I D R I Q V T P P G N G C P K T E V V I W T K M K K V I C V N P R A K W L Q R L L R H V Q S K S L S S T P Q A P V S K R R A A