Protein

CXCL2_HHV8P

SUMMARY
Gene
CXCL2_HHV8P
Full name
Viral macrophage inflammatory protein 2
Organism
Human herpesvirus 8 type P (isolate GK18)
Subfamily
CXCL
Sequence type
Wild-type
UniProt ID
Q98157 Open UniProt
IUPHAR ID
-
GtoP partners
-
DIAGRAM
T S Q L C S K P 30s-loop K R G R 40s-loop D K S K 50s-loopC-term M D T K G I L L V A V L T A L L C L Q S G D T L G A S W H R P D K C C L G Y Q K R P L P Q V N-term P Y W S S L L G V I F L T A C V Q D W V K K L M Q Q L P V T A R
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SEQUENCE

Residues are colour-coded by structural context. Hover to view sequence and CCN numbering.

N-term
M
D
T
K
G
I
L
L
V
A
10
 
V
L
T
A
L
L
C
L
Q
S
20
 
G
D
T
L
G
A
S
W
H
R
30
  CX N-loop
P
D
K
C
C
L
G
Y
Q
K
40
  B1
R
P
L
P
Q
V
L
L
S
S
50
  30s-loop
W
Y
P
T
S
Q
L
C
S
K
60
  B2 40s-loop
P
G
V
I
F
L
T
K
R
G
70
  B3 50s-loop Helix
R
Q
V
C
A
D
K
S
K
D
80
  C-term
W
V
K
K
L
M
Q
Q
L
P
90
 
V
T
A
R
94
STRUCTURES

Experimental structures

PDB Method Resolution State Publication date Reference
1CM9 - A,B X-ray 2.1 Dimer 1999-06-24 10.1021/BI001166F open_in_new
1HFG - A Nmr None Monomer 2001-01-07 10.1016/S0014-5793(00)02393-0 open_in_new
1HFN - A Nmr None Monomer 2001-01-07 10.1016/S0014-5793(00)02393-0 open_in_new
1HHV - A Nmr None Monomer 2003-09-16 10.1046/J.1432-1327.2001.02184.X open_in_new
1VMP - A Nmr None Monomer 1999-11-24 -
2FHT - A X-ray 1.7 Monomer 2006-12-26 10.1002/PROT.21172 open_in_new
2FJ2 - A,B,C,D X-ray 2.3 Dimer 2006-12-26 10.1002/PROT.21172 open_in_new
4RWS - C X-ray 3.1 Monomer 2015-02-11 10.1126/SCIENCE.1261064 open_in_new

No predicted structures or complexes found for this protein.

SEQUENCE ALIGNMENT

Canonical residues are compared against each available structure at matched CCN positions.

Position NTc.Cm33 NTc.Cm32 NTc.Cm31 NTc.Cm30 NTc.Cm29 NTc.Cm28 NTc.Cm27 NTc.Cm26 NTc.Cm25 NTc.Cm24 NTc.Cm23 NTc.Cm22 NTc.Cm21 NTc.Cm20 NTc.Cm19 NTc.Cm18 NTc.Cm17 NTc.Cm16 NTc.Cm15 NTc.Cm14 NTc.Cm13 NTc.Cm12 NTc.Cm11 NTc.Cm10 NTc.Cm9 NTc.Cm8 NTc.Cm7 NTc.Cm6 NTc.Cm5 NTc.Cm4 NTc.Cm3 NTc.Cm2 NTc.Cm1 CX.1 CX.5 cxb1.1 cxb1.2 cxb1.5 cxb1.6 cxb1.7 cxb1.8 cxb1.10 cxb1.11 cxb1.14 cxb1.15 cxb1.16 B1.1 B1.2 B1.3 B1.4 B1.5 B1.6 B1.7 b1b2.4 b1b2.6 b1b2.9 b1b2.10 b1b2.12 b1b2.13 b1b2.14 b1b2.16 B2.1 B2.2 B2.3 B2.4 B2.5 B2.6 b2b3.2 b2b3.4 b2b3.11 b2b3.12 B3.1 B3.2 B3.3 B3.4 b3h.1 b3h.2 b3h.3 b3h.4 H.1 H.2 H.3 H.4 H.5 H.6 H.7 H.8 H.9 H.10 CT.1 CT.2 CT.3 CT.4 CT.5
Canonical sequence M D T K G I L L V A V L T A L L C L Q S G D T L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
1CM9 - - - - - - - - - - - - - - - - - - - - - - - - - - S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L - Q Q L P V T A R
1HFG - - - - - - - - - - - - - - - - - - - - - - - L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
1HFN - - - - - - - - - - - - - - - - - - - - - - - L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
1HHV - - - - - - - - - - - - - - - - - - - - G D T L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L - Q Q L P V T A R
1VMP - - - - - - - - - - - - - - - - - - - - - - - L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
2FHT - - - - - - - - - - - - - - - - - - - - - - - - - - S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
2FJ2 - - - - - - - - - - - - - - - - - - - - - - - - - - S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
4RWS - - - - - - - - - - - - - - - - - - - - - - - L G A S C H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A -