CXCL2_HHV8P

  • Alternate name(s): Viral macrophage inflammatory protein 2
  • Organism: Human herpesvirus 8 type P (isolate GK18)
  • UniProt ID: Q98157 open_in_new


Wild type sequence

Residue N-term   CX   N-loop   B1   30s-loop   B2   40s-loop   B3   50s-loop   Helix   C-term  
  NTc.Cm33 NTc.Cm32 NTc.Cm31 NTc.Cm30 NTc.Cm29 NTc.Cm28 NTc.Cm27 NTc.Cm26 NTc.Cm25 NTc.Cm24 NTc.Cm23 NTc.Cm22 NTc.Cm21 NTc.Cm20 NTc.Cm19 NTc.Cm18 NTc.Cm17 NTc.Cm16 NTc.Cm15 NTc.Cm14 NTc.Cm13 NTc.Cm12 NTc.Cm11 NTc.Cm10 NTc.Cm9 NTc.Cm8 NTc.Cm7 NTc.Cm6 NTc.Cm5 NTc.Cm4 NTc.Cm3 NTc.Cm2 NTc.Cm1   CX.1 CX.5   cxb1.1 cxb1.2 cxb1.5 cxb1.6 cxb1.7 cxb1.8 cxb1.10 cxb1.11 cxb1.14 cxb1.15 cxb1.16   B1.1 B1.2 B1.3 B1.4 B1.5 B1.6 B1.7   b1b2.4 b1b2.6 b1b2.9 b1b2.10 b1b2.12 b1b2.13 b1b2.14 b1b2.16   B2.1 B2.2 B2.3 B2.4 B2.5 B2.6   b2b3.2 b2b3.4 b2b3.11 b2b3.12   B3.1 B3.2 B3.3 B3.4   b3h.1 b3h.2 b3h.3 b3h.4   H.1 H.2 H.3 H.4 H.5 H.6 H.7 H.8 H.9 H.10   CT.1 CT.2 CT.3 CT.4 CT.5  
Wild Type M D T K G I L L V A V L T A L L C L Q S G D T L G A S W H R P D K   C C   L G Y Q K R P L P Q V   L L S S W Y P   T S Q L C S K P   G V I F L T   K R G R   Q V C A   D K S K   D W V K K L M Q Q L   P V T A R  

Snake Plot

T S Q L C S K P 30s-loop K R G R 40s-loop D K S K 50s-loopC-term M D T K G I L L V A V L T A L L C L Q S G D T L G A S W H R P D K C C L G Y Q K R P L P Q V N-term P Y W S S L L G V I F L T A C V Q D W V K K L M Q Q L P V T A R
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List of structures

PDB Method Resolution State Publication date Reference
1CM9 - A,B X-ray 2.1 Dimer 1999-06-24 10.1021/BI001166F open_in_new
1HFG - A Nmr None Monomer 2001-01-07 10.1016/S0014-5793(00)02393-0 open_in_new
1HFN - A Nmr None Monomer 2001-01-07 10.1016/S0014-5793(00)02393-0 open_in_new
1HHV - A Nmr None Monomer 2003-09-16 10.1046/J.1432-1327.2001.02184.X open_in_new
1VMP - A Nmr None Monomer 1999-11-24 -
2FHT - A X-ray 1.7 Monomer 2006-12-26 10.1002/PROT.21172 open_in_new
2FJ2 - A,B,C,D X-ray 2.3 Dimer 2006-12-26 10.1002/PROT.21172 open_in_new
4RWS - C X-ray 3.1 Monomer 2015-02-11 10.1126/SCIENCE.1261064 open_in_new

Sequence alignment from structures

Position NTc.Cm33 NTc.Cm32 NTc.Cm31 NTc.Cm30 NTc.Cm29 NTc.Cm28 NTc.Cm27 NTc.Cm26 NTc.Cm25 NTc.Cm24 NTc.Cm23 NTc.Cm22 NTc.Cm21 NTc.Cm20 NTc.Cm19 NTc.Cm18 NTc.Cm17 NTc.Cm16 NTc.Cm15 NTc.Cm14 NTc.Cm13 NTc.Cm12 NTc.Cm11 NTc.Cm10 NTc.Cm9 NTc.Cm8 NTc.Cm7 NTc.Cm6 NTc.Cm5 NTc.Cm4 NTc.Cm3 NTc.Cm2 NTc.Cm1 CX.1 CX.5 cxb1.1 cxb1.2 cxb1.5 cxb1.6 cxb1.7 cxb1.8 cxb1.10 cxb1.11 cxb1.14 cxb1.15 cxb1.16 B1.1 B1.2 B1.3 B1.4 B1.5 B1.6 B1.7 b1b2.4 b1b2.6 b1b2.9 b1b2.10 b1b2.12 b1b2.13 b1b2.14 b1b2.16 B2.1 B2.2 B2.3 B2.4 B2.5 B2.6 b2b3.2 b2b3.4 b2b3.11 b2b3.12 B3.1 B3.2 B3.3 B3.4 b3h.1 b3h.2 b3h.3 b3h.4 H.1 H.2 H.3 H.4 H.5 H.6 H.7 H.8 H.9 H.10 CT.1 CT.2 CT.3 CT.4 CT.5
Canonical Sequence M D T K G I L L V A V L T A L L C L Q S G D T L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
1CM9 - A,B - - - - - - - - - - - - - - - - - - - - - - - - - - S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L - Q Q L P V T A R
1HFG - A - - - - - - - - - - - - - - - - - - - - - - - L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
1HFN - A - - - - - - - - - - - - - - - - - - - - - - - L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
1HHV - A - - - - - - - - - - - - - - - - - - - - G D T L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L - Q Q L P V T A R
1VMP - A - - - - - - - - - - - - - - - - - - - - - - - L G A S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
2FHT - A - - - - - - - - - - - - - - - - - - - - - - - - - - S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
2FJ2 - A,B,C,D - - - - - - - - - - - - - - - - - - - - - - - - - - S W H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A R
4RWS - C - - - - - - - - - - - - - - - - - - - - - - - L G A S C H R P D K C C L G Y Q K R P L P Q V L L S S W Y P T S Q L C S K P G V I F L T K R G R Q V C A D K S K D W V K K L M Q Q L P V T A -