XCL1_HUMAN

  • Alternate name(s): Lymphotactin
  • Organism: Homo sapiens
  • UniProt ID: P47992 open_in_new


Wild type sequence

Residue N-term   CX   N-loop   B1   30s-loop   B2   40s-loop   B3   50s-loop   Helix   C-term  
  NTc.Cm30 NTc.Cm29 NTc.Cm28 NTc.Cm27 NTc.Cm26 NTc.Cm25 NTc.Cm24 NTc.Cm23 NTc.Cm22 NTc.Cm21 NTc.Cm20 NTc.Cm19 NTc.Cm18 NTc.Cm17 NTc.Cm16 NTc.Cm15 NTc.Cm14 NTc.Cm13 NTc.Cm12 NTc.Cm11 NTc.Cm10 NTc.Cm9 NTc.Cm8 NTc.Cm7 NTc.Cm6 NTc.Cm5 NTc.Cm4 NTc.Cm3 NTc.Cm2 NTc.Cm1   CX.4 CX.5   cxb1.1 cxb1.2 cxb1.5 cxb1.6 cxb1.7 cxb1.8 cxb1.10 cxb1.11 cxb1.14 cxb1.15 cxb1.16   B1.1 B1.2 B1.3 B1.4 B1.5 B1.6 B1.7   b1b2.4 b1b2.6 b1b2.7 b1b2.13 b1b2.14 b1b2.16   B2.1 B2.2 B2.3 B2.4 B2.5 B2.6   b2b3.2 b2b3.4 b2b3.11 b2b3.12   B3.1 B3.2 B3.3 B3.4   b3h.1 b3h.2 b3h.3 b3h.4   H.1 H.2 H.3 H.4 H.5 H.6 H.7 H.8 H.9 H.10   CT.1 CT.2 CT.3 CT.4 CT.5 CT.6 CT.7 CT.8 CT.9 CT.10 CT.11 CT.12 CT.13 CT.14 CT.15 CT.16 CT.17 CT.18 CT.19 CT.20 CT.21 CT.22 CT.23 CT.24 CT.25 CT.26 CT.27 CT.28 CT.29 CT.30  
Wild Type M R L L I L A L L G I C S L T A Y I V E G V G S E V S D K R   T C   V S L T T Q R L P V S   R I K T Y T I   T E G S L R   A V I F I T   K R G L   K V C A   D P Q A   T W V R D V V R S M   D R K S N T R N N M I Q T K P T G T Q Q S T N T A V T L T G  

Snake Plot

T E G S L R 30s-loop K R G L 40s-loop D P Q A 50s-loopC-term M R L L I L A L L G I C S L T A Y I V E G V G S E V S D K R T C V S L T T Q R L P V S N-term I T Y T K I R A V I F I T A C V K T W V R D V V R S M D R K S N T R N N M I Q T K P T G T Q Q S T N T A V T L T G
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List of structures

PDB Method Resolution State Publication date Reference
1J8I - A Nmr None Monomer 2001-10-24 10.1021/BI011106P open_in_new
1J9O - A Nmr None Monomer 2001-10-24 10.1021/BI011106P open_in_new
2HDM - A Nmr None Monomer 2007-05-01 10.1021/BI602365D open_in_new
2JP1 - A,B Nmr None Dimer 2008-03-11 10.1073/PNAS.0709518105 open_in_new
2NYZ - E,D X-ray 2.6 Monomer 2007-12-25 10.1084/JEM.20071677 open_in_new
2N54 - A,B Nmr None Dimer 2015-10-07 10.1021/ACSCHEMBIO.5B00542 open_in_new
9AST - L Cryo-em 3.07 Monomer 2024-12-11 10.1073/PNAS.2405732121 open_in_new

Sequence alignment from structures

Position NTc.Cm30 NTc.Cm29 NTc.Cm28 NTc.Cm27 NTc.Cm26 NTc.Cm25 NTc.Cm24 NTc.Cm23 NTc.Cm22 NTc.Cm21 NTc.Cm20 NTc.Cm19 NTc.Cm18 NTc.Cm17 NTc.Cm16 NTc.Cm15 NTc.Cm14 NTc.Cm13 NTc.Cm12 NTc.Cm11 NTc.Cm10 NTc.Cm9 NTc.Cm8 NTc.Cm7 NTc.Cm6 NTc.Cm5 NTc.Cm4 NTc.Cm3 NTc.Cm2 NTc.Cm1 CX.4 CX.5 cxb1.1 cxb1.2 cxb1.5 cxb1.6 cxb1.7 cxb1.8 cxb1.10 cxb1.11 cxb1.14 cxb1.15 cxb1.16 B1.1 B1.2 B1.3 B1.4 B1.5 B1.6 B1.7 b1b2.4 b1b2.6 b1b2.7 b1b2.13 b1b2.14 b1b2.16 B2.1 B2.2 B2.3 B2.4 B2.5 B2.6 b2b3.2 b2b3.4 b2b3.11 b2b3.12 B3.1 B3.2 B3.3 B3.4 b3h.1 b3h.2 b3h.3 b3h.4 H.1 H.2 H.3 H.4 H.5 H.6 H.7 H.8 H.9 H.10 CT.1 CT.2 CT.3 CT.4 CT.5 CT.6 CT.7 CT.8 CT.9 CT.10 CT.11 CT.12 CT.13 CT.14 CT.15 CT.16 CT.17 CT.18 CT.19 CT.20 CT.21 CT.22 CT.23 CT.24 CT.25 CT.26 CT.27 CT.28 CT.29 CT.30
Canonical Sequence M R L L I L A L L G I C S L T A Y I V E G V G S E V S D K R T C V S L T T Q R L P V S R I K T Y T I T E G S L R A V I F I T K R G L K V C A D P Q A T W V R D V V R S M D R K S N T R N N M I Q T K P T G T Q Q S T N T A V T L T G
1J8I - A - - - - - - - - - - - - - - - - - - - - - V G S E V S D K R T C V S L T T Q R L P V S R I K T Y T I T E G S L R A V I F I T K R G L K V C A D P Q A T W V R D V V R S M D R K S N T R N N M I Q T K P T G T Q Q S T N T A V T L T G
1J9O - A - - - - - - - - - - - - - - - - - - - - - V G S E V S D K R T C V S L T T Q R L P V S R I K T Y T I T E G S L R A V I F I T K R G L K V C A D P Q A T W V R D V V R S M D R K S N T R N N M I Q T K P T G T Q Q S T N T A V T L T G
2HDM - A - - - - - - - - - - - - - - - - - - - - - - G S E V S D K R T C V S L T T Q R L P C S R I K T Y T I T E G S L R A V I F I T K R G L K V C A D P Q A T W V R D C V R S M D R K S N T R N N M I Q - - - - - - - - - - - - - - - - - -
2JP1 - A,B - - - - - - - - - - - - - - - - - - - - - V G S E V S D K R T C V S L T T Q R L P V S R I K T Y T I T E G S L R A V I F I T K R G L K V C A D P Q A T W V R D V V - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2NYZ - E,D - - - - - - - - - - - - - - - - - - - - - - - - - - - D K R T C V S L T T Q R L P V S R I K T Y T I T E G S L R A V I F I T K R G L K V C A D P Q A T W V R D V V R S M D R K S N T R N N - - - - - - - - - - - - - - - - - - - - -
2N54 - A,B - - - - - - - - - - - - - - - - - - - - - V G S E V S D K R T C V S L T T Q R L P V S R I K T Y T I T E G S L R C V I F I T K R G L K V C C D P Q A T W V R D V V R S M D R K - - - - - - - - - - - - - - - - - - - - - - - - - - -
9AST - L - - - - - - - - - - - - - - - - - - - - - V G S E V S D K R T C - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -