Interactions for 1A15 (chain A)
Structure details
- PDB ID: 1A15 open_in_new
- Protein: CXCL12_HUMAN
- Organism: Homo sapiens
- UniProt ID: P48061 open_in_new
- Method: X-ray
- Resolution: 2.2 Å
- Date: Aug. 12, 1998
- Reference: 10.1073/PNAS.95.12.6941 open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Ala 19 | 76 | N-loop | UNL 1 | SULFATE ION (None) | VdWContact |
| Arg 20 | 80 | N-loop | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Arg 20 | 80 | N-loop | UNL 1 | SULFATE ION (None) | HBAcceptor |
| Arg 20 | 80 | N-loop | UNL 1 | SULFATE ION (None) | Anionic |
| Arg 20 | 80 | N-loop | UNL 1 | SULFATE ION (None) | VdWContact |
| Ala 21 | 81 | N-loop | UNL 1 | SULFATE ION (None) | HBAcceptor |
| Ala 21 | 81 | N-loop | UNL 1 | SULFATE ION (None) | VdWContact |
| Val 23 | 83 | B1 | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBAcceptor |
| Val 23 | 83 | B1 | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Lys 24 | 84 | B1 | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBAcceptor |
| Lys 24 | 84 | B1 | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| His 25 | 85 | B1 | LYS 27 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| His 25 | 85 | B1 | LEU 29 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| His 25 | 85 | B1 | LEU 29 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| His 25 | 85 | B1 | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Leu 26 | 86 | B1 | LYS 27 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBAcceptor |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBDonor |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Lys 27 | 87 | B1 | HIS 25 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Lys 27 | 87 | B1 | LEU 26 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBAcceptor |
| Ile 28 | 88 | B1 | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | LEU 62 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | LEU 62 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBAcceptor |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBDonor |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 29 | 89 | B1 | HIS 25 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 29 | 89 | B1 | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Asn 30 | 90 | 30s-loop | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Asn 30 | 90 | 30s-loop | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBDonor |
| Asn 30 | 90 | 30s-loop | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Asn 30 | 90 | 30s-loop | GLU 63 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Leu 36 | 99 | 30s-loop | TYR 61 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Leu 36 | 99 | 30s-loop | GLU 63 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Tyr 61 | 128 | Helix | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Tyr 61 | 128 | Helix | ASN 30 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Tyr 61 | 128 | Helix | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Tyr 61 | 128 | Helix | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBDonor |
| Tyr 61 | 128 | Helix | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Leu 62 | 129 | Helix | LEU 62 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 62 | 129 | Helix | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 62 | 129 | Helix | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Ala 65 | 132 | Helix | ILE 38 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Ala 65 | 132 | Helix | GLN 37 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Ala 65 | 132 | Helix | ILE 28 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | PRO 53 | STROMAL DERIVED FACTOR-1ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | PRO 53 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Leu 66 | 133 | Helix | LYS 54 | STROMAL DERIVED FACTOR-1ALPHA (B) | HBAcceptor |
| Leu 66 | 133 | Helix | LYS 54 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Asn 67 | 134 | Helix | PRO 53 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
| Asn 67 | 134 | Helix | LEU 62 | STROMAL DERIVED FACTOR-1ALPHA (B) | VdWContact |
Ligand interaction network
SO4_A_0
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