Interactions for 1CM9 (chain B)
Structure details
- PDB ID: 1CM9 open_in_new
- Protein: CXCL2_HHV8P
- Organism: Human herpesvirus 8 type P
- UniProt ID: Q98157 open_in_new
- Method: X-ray
- Resolution: 2.1 Å
- Date: June 24, 1999
- Reference: 10.1021/BI001166F open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Trp 8 | 57 | N-term | GLN 19 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Trp 8 | 57 | N-term | ARG 21 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Anionic |
| His 9 | 58 | N-term | CYS 54 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| His 9 | 58 | N-term | CYS 54 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | HBAcceptor |
| His 9 | 58 | N-term | CYS 54 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| His 9 | 58 | N-term | TYR 18 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| His 9 | 58 | N-term | GLN 19 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| His 9 | 58 | N-term | GLN 19 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Arg 10 | 59 | N-term | GLN 52 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Pro 11 | 60 | N-term | GLN 52 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Pro 11 | 60 | N-term | CYS 54 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Pro 11 | 60 | N-term | ILE 44 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Pro 11 | 60 | N-term | ILE 44 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Pro 11 | 60 | N-term | LYS 13 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Asp 12 | 61 | N-term | LEU 16 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Asp 12 | 61 | N-term | CYS 14 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | HBAcceptor |
| Asp 12 | 61 | N-term | CYS 14 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | HBDonor |
| Asp 12 | 61 | N-term | CYS 14 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Lys 13 | 62 | N-term | ASP 12 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Lys 13 | 62 | N-term | LYS 13 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Lys 13 | 62 | N-term | PRO 11 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Cys 14 | 63 | CX | ASP 12 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | HBAcceptor |
| Cys 14 | 63 | CX | ASP 12 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | HBDonor |
| Cys 14 | 63 | CX | ASP 12 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Cys 14 | 63 | CX | CYS 14 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Leu 16 | 68 | N-loop | ASP 12 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Leu 16 | 68 | N-loop | SER 35 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Leu 16 | 68 | N-loop | LEU 37 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Leu 16 | 68 | N-loop | LEU 37 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Gly 17 | 69 | N-loop | HIS 9 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Tyr 18 | 70 | N-loop | HIS 9 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Gln 19 | 71 | N-loop | SER 7 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Leu 37 | 94 | 30s-loop | LEU 16 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Ser 39 | 96 | 30s-loop | SER 39 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Ile 44 | 102 | B2 | PRO 11 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Gln 52 | 115 | B3 | ARG 10 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
| Gln 52 | 115 | B3 | PRO 11 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Val 53 | 116 | B3 | HIS 9 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | Hydrophobic |
| Cys 54 | 117 | B3 | PRO 11 | PROTEIN (VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II) (A) | VdWContact |
Interaction pattern search
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