Interactions for 1QG7 (chain A)
Structure details
- PDB ID: 1QG7 open_in_new
- Protein: CXCL12_HUMAN
- Organism: Homo sapiens
- UniProt ID: P48061 open_in_new
- Method: X-ray
- Resolution: 2.0 Å
- Date: Feb. 28, 2001
- Reference: 10.1089/10799900050116390 open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Arg 20 | 80 | N-loop | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBDonor |
| Arg 20 | 80 | N-loop | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Val 23 | 83 | B1 | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBAcceptor |
| Val 23 | 83 | B1 | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Lys 24 | 84 | B1 | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBAcceptor |
| Lys 24 | 84 | B1 | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| His 25 | 85 | B1 | LYS 27 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| His 25 | 85 | B1 | LYS 27 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | PiCation |
| His 25 | 85 | B1 | LEU 29 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 26 | 86 | B1 | LYS 27 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBAcceptor |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBDonor |
| Leu 26 | 86 | B1 | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Lys 27 | 87 | B1 | LEU 26 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Lys 27 | 87 | B1 | HIS 25 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBAcceptor |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBDonor |
| Ile 28 | 88 | B1 | LEU 26 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | HIS 25 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBAcceptor |
| Ile 28 | 88 | B1 | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Ile 28 | 88 | B1 | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | LEU 62 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ile 28 | 88 | B1 | LEU 62 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 29 | 89 | B1 | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 29 | 89 | B1 | HIS 25 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 29 | 89 | B1 | HIS 25 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Asn 30 | 90 | 30s-loop | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Asn 30 | 90 | 30s-loop | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBDonor |
| Asn 30 | 90 | 30s-loop | TYR 61 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 36 | 99 | 30s-loop | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 36 | 99 | 30s-loop | GLU 63 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ile 38 | 101 | B2 | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ile 58 | 125 | Helix | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Gln 59 | 126 | Helix | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBDonor |
| Gln 59 | 126 | Helix | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Gln 59 | 126 | Helix | LEU 66 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Tyr 61 | 128 | Helix | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Tyr 61 | 128 | Helix | ASN 30 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Tyr 61 | 128 | Helix | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Tyr 61 | 128 | Helix | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBDonor |
| Tyr 61 | 128 | Helix | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 62 | 129 | Helix | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 62 | 129 | Helix | ALA 65 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 62 | 129 | Helix | LEU 66 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 62 | 129 | Helix | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 62 | 129 | Helix | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 62 | 129 | Helix | LEU 62 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ala 65 | 132 | Helix | GLN 37 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ala 65 | 132 | Helix | GLN 37 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Ala 65 | 132 | Helix | ILE 38 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Ala 65 | 132 | Helix | ILE 28 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | LYS 54 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | HBAcceptor |
| Leu 66 | 133 | Helix | LYS 54 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 66 | 133 | Helix | GLN 59 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | ILE 58 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | LEU 66 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | LEU 66 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
| Leu 66 | 133 | Helix | LEU 62 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Leu 66 | 133 | Helix | ILE 38 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Hydrophobic |
| Asn 67 | 134 | Helix | LYS 54 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | Anionic |
| Asn 67 | 134 | Helix | LYS 54 | STROMAL CELL-DERIVED FACTOR 1 ALPHA (B) | VdWContact |
Ligand interaction network
SO4_A_68
SO4_B_68
SO4_B_69
Interaction pattern search
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