Interactions for 1U4P (chain A)
Structure details
- PDB ID: 1U4P open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 1.7 Å
- Date: Nov. 9, 2004
- Reference: 10.1016/J.STR.2004.08.014 open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Tyr 3 | 56 | N-term | ARG 47 | Small inducible cytokine A5 (B) | PiCation |
| Tyr 3 | 56 | N-term | ARG 47 | Small inducible cytokine A5 (B) | VdWContact |
| Ser 4 | 57 | N-term | ALA 13 | Small inducible cytokine A5 (B) | VdWContact |
| Ser 5 | 58 | N-term | CYS 50 | Small inducible cytokine A5 (B) | HBAcceptor |
| Ser 5 | 58 | N-term | CYS 50 | Small inducible cytokine A5 (B) | VdWContact |
| Ser 5 | 58 | N-term | ALA 13 | Small inducible cytokine A5 (B) | VdWContact |
| Asp 6 | 59 | N-term | ARG 47 | Small inducible cytokine A5 (B) | HBAcceptor |
| Asp 6 | 59 | N-term | ARG 47 | Small inducible cytokine A5 (B) | Anionic |
| Asp 6 | 59 | N-term | ARG 47 | Small inducible cytokine A5 (B) | VdWContact |
| Asp 6 | 59 | N-term | GLN 48 | Small inducible cytokine A5 (B) | VdWContact |
| Thr 7 | 60 | N-term | VAL 40 | Small inducible cytokine A5 (B) | Hydrophobic |
| Thr 7 | 60 | N-term | PRO 9 | Small inducible cytokine A5 (B) | Hydrophobic |
| Thr 7 | 60 | N-term | CYS 10 | Small inducible cytokine A5 (B) | VdWContact |
| Thr 7 | 60 | N-term | CYS 11 | Small inducible cytokine A5 (B) | VdWContact |
| Thr 7 | 60 | N-term | GLN 48 | Small inducible cytokine A5 (B) | Hydrophobic |
| Thr 7 | 60 | N-term | GLN 48 | Small inducible cytokine A5 (B) | HBAcceptor |
| Thr 7 | 60 | N-term | GLN 48 | Small inducible cytokine A5 (B) | HBDonor |
| Thr 7 | 60 | N-term | GLN 48 | Small inducible cytokine A5 (B) | VdWContact |
| Thr 8 | 61 | N-term | CYS 10 | Small inducible cytokine A5 (B) | HBAcceptor |
| Thr 8 | 61 | N-term | CYS 10 | Small inducible cytokine A5 (B) | HBDonor |
| Thr 8 | 61 | N-term | CYS 10 | Small inducible cytokine A5 (B) | VdWContact |
| Thr 8 | 61 | N-term | PHE 12 | Small inducible cytokine A5 (B) | Hydrophobic |
| Thr 8 | 61 | N-term | PHE 12 | Small inducible cytokine A5 (B) | VdWContact |
| Pro 9 | 62 | N-term | THR 7 | Small inducible cytokine A5 (B) | Hydrophobic |
| Cys 10 | 63 | CX | THR 7 | Small inducible cytokine A5 (B) | VdWContact |
| Cys 10 | 63 | CX | CYS 10 | Small inducible cytokine A5 (B) | Hydrophobic |
| Cys 10 | 63 | CX | PHE 12 | Small inducible cytokine A5 (B) | VdWContact |
| Cys 10 | 63 | CX | THR 8 | Small inducible cytokine A5 (B) | HBAcceptor |
| Cys 10 | 63 | CX | THR 8 | Small inducible cytokine A5 (B) | HBDonor |
| Cys 10 | 63 | CX | THR 8 | Small inducible cytokine A5 (B) | VdWContact |
| Cys 11 | 67 | CX | THR 7 | Small inducible cytokine A5 (B) | VdWContact |
| Phe 12 | 68 | N-loop | CYS 10 | Small inducible cytokine A5 (B) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | Small inducible cytokine A5 (B) | Hydrophobic |
| Phe 12 | 68 | N-loop | LYS 33 | Small inducible cytokine A5 (B) | VdWContact |
| Phe 12 | 68 | N-loop | THR 8 | Small inducible cytokine A5 (B) | Hydrophobic |
| Phe 12 | 68 | N-loop | THR 8 | Small inducible cytokine A5 (B) | VdWContact |
| Ala 13 | 69 | N-loop | SER 5 | Small inducible cytokine A5 (B) | VdWContact |
| Ala 13 | 69 | N-loop | SER 4 | Small inducible cytokine A5 (B) | VdWContact |
| Lys 33 | 94 | 30s-loop | PHE 12 | Small inducible cytokine A5 (B) | Hydrophobic |
| Val 40 | 102 | B2 | THR 7 | Small inducible cytokine A5 (B) | Hydrophobic |
| Arg 47 | 114 | 40s-loop | ASP 6 | Small inducible cytokine A5 (B) | HBDonor |
| Arg 47 | 114 | 40s-loop | ASP 6 | Small inducible cytokine A5 (B) | Cationic |
| Arg 47 | 114 | 40s-loop | ASP 6 | Small inducible cytokine A5 (B) | VdWContact |
| Gln 48 | 115 | B3 | ASP 6 | Small inducible cytokine A5 (B) | VdWContact |
| Gln 48 | 115 | B3 | THR 7 | Small inducible cytokine A5 (B) | Hydrophobic |
| Gln 48 | 115 | B3 | THR 7 | Small inducible cytokine A5 (B) | HBAcceptor |
| Gln 48 | 115 | B3 | THR 7 | Small inducible cytokine A5 (B) | VdWContact |
| Cys 50 | 117 | B3 | SER 5 | Small inducible cytokine A5 (B) | HBDonor |
| Cys 50 | 117 | B3 | SER 5 | Small inducible cytokine A5 (B) | VdWContact |
Ligand interaction network
ACY_B_401
Interaction pattern search
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