Interactions for 2L9H (chain A)
Structure details
- PDB ID: 2L9H open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: Solution nmr; solution scattering
- Resolution: 0.0 Å
- Date: June 22, 2011
- Reference: 10.1016/J.STR.2011.06.001 open_in_new
- State: dimer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Tyr 3 | 56 | N-term | ALA 13 | C-C motif chemokine 5 (B) | Hydrophobic |
| Tyr 3 | 56 | N-term | PHE 12 | C-C motif chemokine 5 (B) | Hydrophobic |
| Ser 4 | 57 | N-term | ALA 13 | C-C motif chemokine 5 (B) | VdWContact |
| Ser 5 | 58 | N-term | CYS 50 | C-C motif chemokine 5 (B) | HBAcceptor |
| Ser 5 | 58 | N-term | CYS 50 | C-C motif chemokine 5 (B) | VdWContact |
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (B) | VdWContact |
| Asp 6 | 59 | N-term | ARG 47 | C-C motif chemokine 5 (B) | HBAcceptor |
| Asp 6 | 59 | N-term | ARG 47 | C-C motif chemokine 5 (B) | Anionic |
| Asp 6 | 59 | N-term | ARG 47 | C-C motif chemokine 5 (B) | VdWContact |
| Thr 7 | 60 | N-term | GLN 48 | C-C motif chemokine 5 (B) | Hydrophobic |
| Thr 7 | 60 | N-term | GLN 48 | C-C motif chemokine 5 (B) | HBDonor |
| Thr 7 | 60 | N-term | GLN 48 | C-C motif chemokine 5 (B) | VdWContact |
| Thr 7 | 60 | N-term | PRO 9 | C-C motif chemokine 5 (B) | Hydrophobic |
| Thr 7 | 60 | N-term | VAL 40 | C-C motif chemokine 5 (B) | Hydrophobic |
| Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (B) | Hydrophobic |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (B) | HBAcceptor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (B) | HBDonor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (B) | VdWContact |
| Pro 9 | 62 | N-term | THR 7 | C-C motif chemokine 5 (B) | Hydrophobic |
| Cys 10 | 63 | CX | PHE 12 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (B) | HBAcceptor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (B) | HBDonor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 10 | 63 | CX | CYS 10 | C-C motif chemokine 5 (B) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (B) | Hydrophobic |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (B) | VdWContact |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (B) | Hydrophobic |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (B) | VdWContact |
| Lys 25 | 84 | B1 | GLU 66 | C-C motif chemokine 5 (C) | HBDonor |
| Lys 25 | 84 | B1 | GLU 66 | C-C motif chemokine 5 (C) | Cationic |
| Lys 25 | 84 | B1 | GLU 66 | C-C motif chemokine 5 (C) | VdWContact |
| Glu 26 | 85 | B1 | GLU 66 | C-C motif chemokine 5 (C) | VdWContact |
| Glu 26 | 85 | B1 | GLU 26 | C-C motif chemokine 5 (C) | Hydrophobic |
| Tyr 27 | 86 | B1 | GLU 66 | C-C motif chemokine 5 (C) | VdWContact |
| Tyr 27 | 86 | B1 | PHE 28 | C-C motif chemokine 5 (C) | Hydrophobic |
| Tyr 27 | 86 | B1 | PHE 28 | C-C motif chemokine 5 (C) | VdWContact |
| Tyr 27 | 86 | B1 | TYR 27 | C-C motif chemokine 5 (C) | Hydrophobic |
| Tyr 27 | 86 | B1 | TYR 27 | C-C motif chemokine 5 (C) | PiStacking |
| Tyr 27 | 86 | B1 | TYR 27 | C-C motif chemokine 5 (C) | VdWContact |
| Phe 28 | 87 | B1 | GLU 66 | C-C motif chemokine 5 (C) | Hydrophobic |
| Phe 28 | 87 | B1 | GLU 66 | C-C motif chemokine 5 (C) | VdWContact |
| Phe 28 | 87 | B1 | ILE 62 | C-C motif chemokine 5 (C) | Hydrophobic |
| Phe 28 | 87 | B1 | ILE 62 | C-C motif chemokine 5 (C) | VdWContact |
| Phe 28 | 87 | B1 | ASN 63 | C-C motif chemokine 5 (C) | Hydrophobic |
| Phe 28 | 87 | B1 | ASN 63 | C-C motif chemokine 5 (C) | VdWContact |
| Phe 28 | 87 | B1 | TYR 27 | C-C motif chemokine 5 (C) | Hydrophobic |
| Phe 28 | 87 | B1 | TYR 27 | C-C motif chemokine 5 (C) | VdWContact |
| Tyr 29 | 88 | B1 | ILE 62 | C-C motif chemokine 5 (C) | Hydrophobic |
| Tyr 29 | 88 | B1 | ILE 62 | C-C motif chemokine 5 (C) | VdWContact |
| Tyr 29 | 88 | B1 | TYR 27 | C-C motif chemokine 5 (C) | HBDonor |
| Tyr 29 | 88 | B1 | TYR 27 | C-C motif chemokine 5 (C) | VdWContact |
| Tyr 29 | 88 | B1 | TYR 29 | C-C motif chemokine 5 (C) | Hydrophobic |
| Ser 31 | 90 | 30s-loop | ASN 63 | C-C motif chemokine 5 (C) | VdWContact |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (B) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (B) | VdWContact |
| Val 40 | 102 | B2 | THR 7 | C-C motif chemokine 5 (B) | Hydrophobic |
| Val 42 | 104 | B2 | GLU 66 | C-C motif chemokine 5 (C) | Hydrophobic |
| Val 42 | 104 | B2 | GLU 66 | C-C motif chemokine 5 (C) | VdWContact |
| Arg 47 | 114 | 40s-loop | SER 4 | C-C motif chemokine 5 (B) | VdWContact |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (B) | HBAcceptor |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (B) | VdWContact |
| Gln 48 | 115 | B3 | MET 67 | C-C motif chemokine 5 (C) | VdWContact |
| Gln 48 | 115 | B3 | SER 5 | C-C motif chemokine 5 (B) | HBAcceptor |
| Gln 48 | 115 | B3 | SER 5 | C-C motif chemokine 5 (B) | VdWContact |
| Gln 48 | 115 | B3 | SER 4 | C-C motif chemokine 5 (B) | HBDonor |
| Gln 48 | 115 | B3 | SER 4 | C-C motif chemokine 5 (B) | VdWContact |
| Cys 50 | 117 | B3 | ASP 6 | C-C motif chemokine 5 (B) | Hydrophobic |
| Cys 50 | 117 | B3 | ASP 6 | C-C motif chemokine 5 (B) | VdWContact |
| Ile 62 | 129 | Helix | PHE 28 | C-C motif chemokine 5 (C) | Hydrophobic |
| Ile 62 | 129 | Helix | PHE 28 | C-C motif chemokine 5 (C) | VdWContact |
| Ile 62 | 129 | Helix | TYR 29 | C-C motif chemokine 5 (C) | Hydrophobic |
| Ile 62 | 129 | Helix | TYR 29 | C-C motif chemokine 5 (C) | VdWContact |
| Leu 65 | 132 | Helix | GLU 26 | C-C motif chemokine 5 (C) | Hydrophobic |
| Leu 65 | 132 | Helix | PHE 28 | C-C motif chemokine 5 (C) | Hydrophobic |
| Leu 65 | 132 | Helix | PHE 28 | C-C motif chemokine 5 (C) | VdWContact |
| Glu 66 | 133 | Helix | PHE 28 | C-C motif chemokine 5 (C) | Hydrophobic |
| Glu 66 | 133 | Helix | PHE 28 | C-C motif chemokine 5 (C) | VdWContact |
| Glu 66 | 133 | Helix | TYR 27 | C-C motif chemokine 5 (C) | VdWContact |
| Glu 66 | 133 | Helix | VAL 40 | C-C motif chemokine 5 (C) | Hydrophobic |
| Glu 66 | 133 | Helix | VAL 40 | C-C motif chemokine 5 (C) | VdWContact |
| Met 67 | 134 | Helix | GLN 48 | C-C motif chemokine 5 (C) | VdWContact |
| Met 67 | 134 | Helix | PRO 9 | C-C motif chemokine 5 (C) | Hydrophobic |
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