Interactions for 2VXW (chain D)
Structure details
- PDB ID: 2VXW open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 1.7 Å
- Date: July 29, 2008
- Reference: 10.1002/PROT.22542 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Pro 9 | 62 | N-term | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Cys 10 | 63 | CX | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Cys 11 | 67 | CX | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | Hydrophobic |
| Phe 12 | 68 | N-loop | ALA 16 | C-C MOTIF CHEMOKINE 5 (A) | HBAcceptor |
| Phe 12 | 68 | N-loop | ALA 16 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Ala 13 | 69 | N-loop | ALA 13 | C-C MOTIF CHEMOKINE 5 (A) | Hydrophobic |
| Ala 13 | 69 | N-loop | TYR 14 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Ala 13 | 69 | N-loop | SER 5 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Tyr 14 | 70 | N-loop | ALA 13 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Tyr 14 | 70 | N-loop | ALA 16 | C-C MOTIF CHEMOKINE 5 (A) | Hydrophobic |
| Tyr 14 | 70 | N-loop | TYR 14 | C-C MOTIF CHEMOKINE 5 (A) | HBAcceptor |
| Tyr 14 | 70 | N-loop | TYR 14 | C-C MOTIF CHEMOKINE 5 (A) | HBDonor |
| Tyr 14 | 70 | N-loop | TYR 14 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Ala 16 | 72 | N-loop | PHE 12 | C-C MOTIF CHEMOKINE 5 (A) | HBDonor |
| Ala 16 | 72 | N-loop | PHE 12 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Ala 16 | 72 | N-loop | TYR 14 | C-C MOTIF CHEMOKINE 5 (A) | Hydrophobic |
| Ala 16 | 72 | N-loop | ASN 36 | C-C MOTIF CHEMOKINE 5 (A) | Hydrophobic |
| Arg 17 | 73 | N-loop | ASN 36 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Phe 28 | 87 | B1 | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | Hydrophobic |
| Thr 30 | 89 | B1 | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | Hydrophobic |
| Asn 36 | 97 | 30s-loop | ARG 17 | C-C MOTIF CHEMOKINE 5 (A) | VdWContact |
| Asn 36 | 97 | 30s-loop | ALA 16 | C-C MOTIF CHEMOKINE 5 (A) | Hydrophobic |
| Val 40 | 102 | B2 | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | Hydrophobic |
| Gln 48 | 115 | B3 | SER 1 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Gln 48 | 115 | B3 | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | Hydrophobic |
| Gln 48 | 115 | B3 | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Val 49 | 116 | B3 | SER 1 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Cys 50 | 117 | B3 | PHE 0 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Cys 50 | 117 | B3 | SER 1 | C-C MOTIF CHEMOKINE 5 (B) | HBDonor |
| Cys 50 | 117 | B3 | SER 1 | C-C MOTIF CHEMOKINE 5 (B) | VdWContact |
| Glu 54 | 121 | 50s-loop | LYS 55 | C-C MOTIF CHEMOKINE 5 (A) | Anionic |
Interaction pattern search
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