Interactions for 3HP3 (chain C)
Structure details
- PDB ID: 3HP3 open_in_new
- Protein: CXCL12_HUMAN
- Organism: Homo sapiens
- UniProt ID: P48061 open_in_new
- Method: X-ray
- Resolution: 2.2 Å
- Date: Jan. 26, 2010
- Reference: 10.1002/PROT.22666 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Leu 5 | 59 | N-term | ARG 12 | CXCL12 protein (H) | HBAcceptor |
| Leu 5 | 59 | N-term | ARG 12 | CXCL12 protein (H) | VdWContact |
| Leu 5 | 59 | N-term | ARG 47 | CXCL12 protein (H) | VdWContact |
| Ser 6 | 60 | N-term | GLU 15 | CXCL12 protein (H) | HBDonor |
| Ser 6 | 60 | N-term | GLU 15 | CXCL12 protein (H) | VdWContact |
| Ser 6 | 60 | N-term | ARG 12 | CXCL12 protein (H) | HBAcceptor |
| Ser 6 | 60 | N-term | ARG 12 | CXCL12 protein (H) | VdWContact |
| Ser 6 | 60 | N-term | PHE 13 | CXCL12 protein (H) | VdWContact |
| Ser 6 | 60 | N-term | CYS 50 | CXCL12 protein (H) | HBAcceptor |
| Ser 6 | 60 | N-term | CYS 50 | CXCL12 protein (H) | VdWContact |
| Tyr 7 | 61 | N-term | PRO 10 | CXCL12 protein (H) | Hydrophobic |
| Tyr 7 | 61 | N-term | PRO 10 | CXCL12 protein (H) | VdWContact |
| Tyr 7 | 61 | N-term | LEU 29 | CXCL12 protein (H) | Hydrophobic |
| Tyr 7 | 61 | N-term | LEU 29 | CXCL12 protein (H) | VdWContact |
| Tyr 7 | 61 | N-term | GLN 48 | CXCL12 protein (H) | Hydrophobic |
| Tyr 7 | 61 | N-term | VAL 39 | CXCL12 protein (H) | Hydrophobic |
| Arg 8 | 62 | N-term | PRO 10 | CXCL12 protein (H) | HBDonor |
| Arg 8 | 62 | N-term | PRO 10 | CXCL12 protein (H) | VdWContact |
| Arg 8 | 62 | N-term | ARG 8 | CXCL12 protein (H) | VdWContact |
| Arg 8 | 62 | N-term | CYS 9 | CXCL12 protein (H) | HBDonor |
| Arg 8 | 62 | N-term | CYS 9 | CXCL12 protein (H) | VdWContact |
| Cys 9 | 63 | CX | ARG 8 | CXCL12 protein (H) | HBAcceptor |
| Cys 9 | 63 | CX | ARG 8 | CXCL12 protein (H) | VdWContact |
| Pro 10 | 66 | CX | PRO 10 | CXCL12 protein (H) | Hydrophobic |
| Pro 10 | 66 | CX | ARG 8 | CXCL12 protein (H) | HBAcceptor |
| Pro 10 | 66 | CX | ARG 8 | CXCL12 protein (H) | VdWContact |
| Pro 10 | 66 | CX | TYR 7 | CXCL12 protein (H) | Hydrophobic |
| Pro 10 | 66 | CX | TYR 7 | CXCL12 protein (H) | VdWContact |
| Cys 11 | 67 | CX | SER 6 | CXCL12 protein (H) | VdWContact |
| Arg 12 | 68 | N-loop | LEU 5 | CXCL12 protein (H) | HBDonor |
| Arg 12 | 68 | N-loop | LEU 5 | CXCL12 protein (H) | VdWContact |
| Arg 12 | 68 | N-loop | SER 6 | CXCL12 protein (H) | HBDonor |
| Arg 12 | 68 | N-loop | SER 6 | CXCL12 protein (H) | VdWContact |
| Phe 13 | 69 | N-loop | SER 6 | CXCL12 protein (H) | VdWContact |
| Glu 15 | 71 | N-loop | SER 6 | CXCL12 protein (H) | HBAcceptor |
| Glu 15 | 71 | N-loop | SER 6 | CXCL12 protein (H) | VdWContact |
| Leu 26 | 86 | B1 | ASN 67 | CXCL12 protein (A) | HBAcceptor |
| Leu 26 | 86 | B1 | ASN 67 | CXCL12 protein (A) | HBDonor |
| Leu 26 | 86 | B1 | ASN 67 | CXCL12 protein (A) | VdWContact |
| Leu 26 | 86 | B1 | LEU 66 | CXCL12 protein (A) | Hydrophobic |
| Lys 27 | 87 | B1 | ASN 67 | CXCL12 protein (A) | VdWContact |
| Ile 28 | 88 | B1 | GLN 59 | CXCL12 protein (A) | Hydrophobic |
| Ile 28 | 88 | B1 | GLU 63 | CXCL12 protein (A) | Hydrophobic |
| Ile 28 | 88 | B1 | GLU 63 | CXCL12 protein (A) | VdWContact |
| Ile 28 | 88 | B1 | LEU 62 | CXCL12 protein (A) | Hydrophobic |
| Leu 29 | 89 | B1 | THR 31 | CXCL12 protein (H) | Hydrophobic |
| Leu 29 | 89 | B1 | TYR 7 | CXCL12 protein (H) | Hydrophobic |
| Asn 30 | 90 | 30s-loop | GLN 59 | CXCL12 protein (A) | Hydrophobic |
| Asn 30 | 90 | 30s-loop | GLN 59 | CXCL12 protein (A) | HBDonor |
| Asn 30 | 90 | 30s-loop | GLN 59 | CXCL12 protein (A) | VdWContact |
| Asn 30 | 90 | 30s-loop | LYS 54 | CXCL12 protein (A) | HBAcceptor |
| Asn 30 | 90 | 30s-loop | LYS 54 | CXCL12 protein (A) | HBDonor |
| Asn 30 | 90 | 30s-loop | LYS 54 | CXCL12 protein (A) | VdWContact |
| Thr 31 | 91 | 30s-loop | LEU 29 | CXCL12 protein (H) | Hydrophobic |
| Thr 31 | 91 | 30s-loop | LEU 29 | CXCL12 protein (H) | VdWContact |
| Thr 31 | 91 | 30s-loop | LYS 54 | CXCL12 protein (A) | VdWContact |
| Thr 31 | 91 | 30s-loop | THR 31 | CXCL12 protein (H) | Hydrophobic |
| Pro 32 | 92 | 30s-loop | GLN 48 | CXCL12 protein (H) | Hydrophobic |
| Asn 33 | 94 | 30s-loop | GLN 48 | CXCL12 protein (H) | VdWContact |
| Asn 33 | 94 | 30s-loop | ARG 41 | CXCL12 protein (H) | HBAcceptor |
| Asn 33 | 94 | 30s-loop | ARG 41 | CXCL12 protein (H) | VdWContact |
| Cys 34 | 95 | 30s-loop | LYS 54 | CXCL12 protein (A) | HBAcceptor |
| Cys 34 | 95 | 30s-loop | LYS 54 | CXCL12 protein (A) | VdWContact |
| Leu 36 | 99 | 30s-loop | LEU 62 | CXCL12 protein (A) | Hydrophobic |
| Leu 36 | 99 | 30s-loop | PRO 53 | CXCL12 protein (A) | Hydrophobic |
| Val 39 | 102 | B2 | TYR 7 | CXCL12 protein (H) | Hydrophobic |
| Gln 48 | 115 | B3 | SER 4 | CXCL12 protein (H) | HBAcceptor |
| Gln 48 | 115 | B3 | SER 4 | CXCL12 protein (H) | VdWContact |
| Gln 48 | 115 | B3 | TYR 7 | CXCL12 protein (H) | Hydrophobic |
| Gln 48 | 115 | B3 | TYR 7 | CXCL12 protein (H) | VdWContact |
| Cys 50 | 117 | B3 | SER 6 | CXCL12 protein (H) | HBDonor |
| Cys 50 | 117 | B3 | SER 6 | CXCL12 protein (H) | VdWContact |
| Pro 53 | 120 | 50s-loop | LEU 36 | CXCL12 protein (A) | Hydrophobic |
| Gln 59 | 126 | Helix | LEU 36 | CXCL12 protein (A) | VdWContact |
| Gln 59 | 126 | Helix | LEU 29 | CXCL12 protein (A) | VdWContact |
| Gln 59 | 126 | Helix | ASN 30 | CXCL12 protein (A) | Hydrophobic |
| Gln 59 | 126 | Helix | ASN 30 | CXCL12 protein (A) | VdWContact |
| Leu 62 | 129 | Helix | ILE 28 | CXCL12 protein (A) | Hydrophobic |
| Leu 62 | 129 | Helix | ILE 28 | CXCL12 protein (A) | VdWContact |
| Leu 62 | 129 | Helix | LEU 62 | CXCL12 protein (A) | Hydrophobic |
| Leu 62 | 129 | Helix | LEU 62 | CXCL12 protein (A) | VdWContact |
| Glu 63 | 130 | Helix | ILE 28 | CXCL12 protein (A) | Hydrophobic |
| Glu 63 | 130 | Helix | ILE 28 | CXCL12 protein (A) | VdWContact |
| Glu 63 | 130 | Helix | LYS 27 | CXCL12 protein (A) | VdWContact |
| Ala 65 | 132 | Helix | ALA 65 | CXCL12 protein (A) | Hydrophobic |
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