Interactions for 5CMD (chain B)


Structure details

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Chemokine diagram

S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopN-term M K V S A A A L A V I L I A T A L C A P A S A S P Y S S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
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Interactions found in structure

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Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Asp 6 59 N-term CYS 50 C-C motif chemokine 5 (A) VdWContact
Asp 6 59 N-term GLN 48 C-C motif chemokine 5 (A) Hydrophobic
Asp 6 59 N-term GLN 48 C-C motif chemokine 5 (A) VdWContact
Thr 7 60 N-term VAL 40 C-C motif chemokine 5 (A) Hydrophobic
Thr 7 60 N-term CYS 11 C-C motif chemokine 5 (A) VdWContact
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (A) HBAcceptor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (A) HBDonor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (A) VdWContact
Pro 9 62 N-term THR 7 C-C motif chemokine 5 (A) Hydrophobic
Cys 10 63 CX THR 8 C-C motif chemokine 5 (A) HBAcceptor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (A) HBDonor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (A) VdWContact
Phe 12 68 N-loop THR 8 C-C motif chemokine 5 (A) Hydrophobic
Phe 12 68 N-loop THR 8 C-C motif chemokine 5 (A) VdWContact
Phe 12 68 N-loop LYS 33 C-C motif chemokine 5 (A) Hydrophobic
Arg 17 73 N-loop UNL 1 SULFATE ION (None) Anionic
Arg 17 73 N-loop UNL 1 SULFATE ION (None) Anionic
Glu 26 85 B1 ARG 47 C-C motif chemokine 5 (D) Anionic
Tyr 29 88 B1 LEU 19 C-C motif chemokine 5 (D) Hydrophobic
Tyr 29 88 B1 LEU 19 C-C motif chemokine 5 (D) VdWContact
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (A) Hydrophobic
Lys 33 94 30s-loop ALA 13 C-C motif chemokine 5 (D) Hydrophobic
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (D) HBDonor
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (D) VdWContact
Val 40 102 B2 THR 7 C-C motif chemokine 5 (A) Hydrophobic
Gln 48 115 B3 THR 7 C-C motif chemokine 5 (A) Hydrophobic
Gln 48 115 B3 THR 7 C-C motif chemokine 5 (A) HBAcceptor
Gln 48 115 B3 THR 7 C-C motif chemokine 5 (A) VdWContact
Gln 48 115 B3 ASP 6 C-C motif chemokine 5 (A) VdWContact
Lys 55 122 50s-loop UNL 1 SULFATE ION (None) VdWContact
Lys 55 122 50s-loop UNL 1 SULFATE ION (None) VdWContact
Lys 56 123 Helix UNL 1 SULFATE ION (None) VdWContact
Lys 56 123 Helix UNL 1 SULFATE ION (None) Anionic
Lys 56 123 Helix UNL 1 SULFATE ION (None) VdWContact
Lys 56 123 Helix UNL 1 SULFATE ION (None) Anionic
Arg 59 126 Helix UNL 1 SULFATE ION (None) Anionic
Arg 59 126 Helix UNL 1 SULFATE ION (None) Anionic
Ile 62 129 Helix HIS 23 C-C motif chemokine 5 (D) Hydrophobic
Asn 63 130 Helix HIS 23 C-C motif chemokine 5 (D) Hydrophobic
Asn 63 130 Helix HIS 23 C-C motif chemokine 5 (D) HBAcceptor
Asn 63 130 Helix HIS 23 C-C motif chemokine 5 (D) VdWContact
Glu 66 133 Helix HIS 23 C-C motif chemokine 5 (D) Hydrophobic
Glu 66 133 Helix HIS 23 C-C motif chemokine 5 (D) VdWContact
Glu 66 133 Helix THR 43 C-C motif chemokine 5 (D) VdWContact
Glu 66 133 Helix LYS 45 C-C motif chemokine 5 (D) Hydrophobic
Met 67 134 Helix HIS 23 C-C motif chemokine 5 (D) Hydrophobic
Met 67 134 Helix ALA 22 C-C motif chemokine 5 (D) Hydrophobic

Ligand interaction network

SO4_A_101

SO4_A_102

SO4_A_103

SO4_A_104

SO4_B_101

SO4_B_102

SO4_B_103

SO4_C_101

SO4_C_102

SO4_E_101

SO4_F_101

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