Interactions for 5CMD (chain D)
Structure details
- PDB ID: 5CMD open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 3.09 Å
- Date: April 13, 2016
- Reference: 10.1073/PNAS.1523981113 open_in_new
- State: oligomer
Chemokine diagram
Pick color:
, 'snake_.png', {scale: 3});){kind=link}
, 'snake_.jpg', {scale: 3});){kind=link}
Interactions found in structure
Download list in excel
| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Ser 5 | 58 | N-term | GLY 32 | C-C motif chemokine 5 (E) | VdWContact |
| Ser 5 | 58 | N-term | GLN 48 | C-C motif chemokine 5 (C) | VdWContact |
| Ser 5 | 58 | N-term | VAL 49 | C-C motif chemokine 5 (C) | VdWContact |
| Ser 5 | 58 | N-term | SER 31 | C-C motif chemokine 5 (E) | VdWContact |
| Thr 7 | 60 | N-term | VAL 40 | C-C motif chemokine 5 (C) | Hydrophobic |
| Thr 7 | 60 | N-term | CYS 10 | C-C motif chemokine 5 (C) | VdWContact |
| Thr 7 | 60 | N-term | PRO 9 | C-C motif chemokine 5 (C) | Hydrophobic |
| Thr 7 | 60 | N-term | PRO 9 | C-C motif chemokine 5 (C) | VdWContact |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (C) | HBAcceptor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (C) | HBDonor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (C) | VdWContact |
| Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (C) | Hydrophobic |
| Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (C) | VdWContact |
| Pro 9 | 62 | N-term | THR 7 | C-C motif chemokine 5 (C) | Hydrophobic |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (C) | HBAcceptor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (C) | HBDonor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (C) | VdWContact |
| Cys 10 | 63 | CX | THR 7 | C-C motif chemokine 5 (C) | VdWContact |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (C) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (B) | HBAcceptor |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (B) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (C) | Hydrophobic |
| Ala 13 | 69 | N-loop | LYS 33 | C-C motif chemokine 5 (B) | Hydrophobic |
| Leu 19 | 75 | N-loop | TYR 29 | C-C motif chemokine 5 (B) | Hydrophobic |
| Leu 19 | 75 | N-loop | TYR 29 | C-C motif chemokine 5 (B) | VdWContact |
| Ala 22 | 81 | N-loop | MET 67 | C-C motif chemokine 5 (B) | Hydrophobic |
| His 23 | 82 | N-loop | ASN 63 | C-C motif chemokine 5 (B) | Hydrophobic |
| His 23 | 82 | N-loop | ASN 63 | C-C motif chemokine 5 (B) | HBDonor |
| His 23 | 82 | N-loop | ASN 63 | C-C motif chemokine 5 (B) | VdWContact |
| His 23 | 82 | N-loop | GLU 66 | C-C motif chemokine 5 (B) | Hydrophobic |
| His 23 | 82 | N-loop | GLU 66 | C-C motif chemokine 5 (B) | VdWContact |
| His 23 | 82 | N-loop | MET 67 | C-C motif chemokine 5 (B) | Hydrophobic |
| His 23 | 82 | N-loop | ILE 62 | C-C motif chemokine 5 (B) | Hydrophobic |
| Glu 26 | 85 | B1 | ARG 47 | C-C motif chemokine 5 (F) | Anionic |
| Glu 26 | 85 | B1 | ARG 47 | C-C motif chemokine 5 (F) | VdWContact |
| Tyr 27 | 86 | B1 | ARG 47 | C-C motif chemokine 5 (F) | Hydrophobic |
| Tyr 27 | 86 | B1 | ARG 47 | C-C motif chemokine 5 (F) | VdWContact |
| Tyr 29 | 88 | B1 | VAL 49 | C-C motif chemokine 5 (F) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (C) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | ALA 13 | C-C motif chemokine 5 (F) | Hydrophobic |
| Val 40 | 102 | B2 | THR 7 | C-C motif chemokine 5 (C) | Hydrophobic |
| Thr 43 | 105 | B2 | GLU 66 | C-C motif chemokine 5 (B) | VdWContact |
| Lys 45 | 112 | 40s-loop | GLU 66 | C-C motif chemokine 5 (B) | Hydrophobic |
| Arg 47 | 114 | 40s-loop | GLU 26 | C-C motif chemokine 5 (B) | Cationic |
| Gln 48 | 115 | B3 | SER 5 | C-C motif chemokine 5 (C) | VdWContact |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (C) | HBAcceptor |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (C) | VdWContact |
| Cys 50 | 117 | B3 | ASP 6 | C-C motif chemokine 5 (C) | Hydrophobic |
| Cys 50 | 117 | B3 | ASP 6 | C-C motif chemokine 5 (C) | HBDonor |
| Cys 50 | 117 | B3 | ASP 6 | C-C motif chemokine 5 (C) | VdWContact |
| Ile 62 | 129 | Helix | HIS 23 | C-C motif chemokine 5 (F) | Hydrophobic |
| Asn 63 | 130 | Helix | HIS 23 | C-C motif chemokine 5 (F) | Hydrophobic |
| Asn 63 | 130 | Helix | HIS 23 | C-C motif chemokine 5 (F) | VdWContact |
| Leu 65 | 132 | Helix | LYS 45 | C-C motif chemokine 5 (F) | Hydrophobic |
| Leu 65 | 132 | Helix | LYS 45 | C-C motif chemokine 5 (F) | VdWContact |
| Glu 66 | 133 | Helix | THR 43 | C-C motif chemokine 5 (F) | HBAcceptor |
| Glu 66 | 133 | Helix | THR 43 | C-C motif chemokine 5 (F) | VdWContact |
| Glu 66 | 133 | Helix | LYS 45 | C-C motif chemokine 5 (F) | HBAcceptor |
| Glu 66 | 133 | Helix | LYS 45 | C-C motif chemokine 5 (F) | VdWContact |
| Glu 66 | 133 | Helix | HIS 23 | C-C motif chemokine 5 (F) | Hydrophobic |
| Glu 66 | 133 | Helix | HIS 23 | C-C motif chemokine 5 (F) | VdWContact |
| Met 67 | 134 | Helix | HIS 23 | C-C motif chemokine 5 (F) | Hydrophobic |
Ligand interaction network
SO4_A_101
SO4_A_102
SO4_A_103
SO4_A_104
SO4_B_101
SO4_B_102
SO4_B_103
SO4_C_101
SO4_C_102
SO4_E_101
SO4_F_101
Interaction pattern search
Search complexes with similar interaction patterns:
