Interactions for 5CMD (chain F)


Structure details


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Chemokine diagram


S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopN-term M K V S A A A L A V I L I A T A L C A P A S A S P Y S S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
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Interactions found in structure


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Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Ser 5 58 N-term CYS 50 C-C motif chemokine 5 (E) HBAcceptor
Ser 5 58 N-term CYS 50 C-C motif chemokine 5 (E) VdWContact
Ser 5 58 N-term ILE 15 C-C motif chemokine 5 (E) VdWContact
Thr 7 60 N-term PRO 9 C-C motif chemokine 5 (E) Hydrophobic
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (E) Hydrophobic
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (E) HBDonor
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (E) VdWContact
Thr 7 60 N-term VAL 40 C-C motif chemokine 5 (E) Hydrophobic
Thr 7 60 N-term CYS 10 C-C motif chemokine 5 (E) VdWContact
Thr 8 61 N-term PHE 12 C-C motif chemokine 5 (E) VdWContact
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (E) HBAcceptor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (E) HBDonor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (E) VdWContact
Pro 9 62 N-term THR 7 C-C motif chemokine 5 (E) Hydrophobic
Cys 10 63 CX THR 8 C-C motif chemokine 5 (E) HBAcceptor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (E) HBDonor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (E) VdWContact
Cys 10 63 CX THR 7 C-C motif chemokine 5 (E) VdWContact
Cys 11 67 CX THR 7 C-C motif chemokine 5 (E) VdWContact
Phe 12 68 N-loop LYS 33 C-C motif chemokine 5 (E) Hydrophobic
Phe 12 68 N-loop LYS 33 C-C motif chemokine 5 (E) VdWContact
Ala 13 69 N-loop LYS 33 C-C motif chemokine 5 (D) Hydrophobic
His 23 82 N-loop GLU 66 C-C motif chemokine 5 (D) Hydrophobic
His 23 82 N-loop GLU 66 C-C motif chemokine 5 (D) VdWContact
His 23 82 N-loop MET 67 C-C motif chemokine 5 (D) Hydrophobic
His 23 82 N-loop ILE 62 C-C motif chemokine 5 (D) Hydrophobic
His 23 82 N-loop ASN 63 C-C motif chemokine 5 (D) Hydrophobic
His 23 82 N-loop ASN 63 C-C motif chemokine 5 (D) VdWContact
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (E) Hydrophobic
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (E) VdWContact
Val 40 102 B2 THR 7 C-C motif chemokine 5 (E) Hydrophobic
Thr 43 105 B2 GLU 66 C-C motif chemokine 5 (D) HBDonor
Thr 43 105 B2 GLU 66 C-C motif chemokine 5 (D) VdWContact
Lys 45 112 40s-loop GLU 66 C-C motif chemokine 5 (D) HBDonor
Lys 45 112 40s-loop GLU 66 C-C motif chemokine 5 (D) VdWContact
Lys 45 112 40s-loop LEU 65 C-C motif chemokine 5 (D) Hydrophobic
Lys 45 112 40s-loop LEU 65 C-C motif chemokine 5 (D) VdWContact
Arg 47 114 40s-loop TYR 27 C-C motif chemokine 5 (D) Hydrophobic
Arg 47 114 40s-loop TYR 27 C-C motif chemokine 5 (D) VdWContact
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (D) Cationic
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (D) VdWContact
Val 49 116 B3 ASP 6 C-C motif chemokine 5 (E) VdWContact
Val 49 116 B3 TYR 29 C-C motif chemokine 5 (D) Hydrophobic
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (E) Hydrophobic
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (E) HBDonor
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (E) VdWContact
Lys 55 122 50s-loop UNL 1 SULFATE ION (None) VdWContact
Lys 55 122 50s-loop UNL 1 SULFATE ION (None) VdWContact
Lys 56 123 Helix UNL 1 SULFATE ION (None) HBAcceptor
Lys 56 123 Helix UNL 1 SULFATE ION (None) VdWContact
Lys 56 123 Helix UNL 1 SULFATE ION (None) HBAcceptor
Lys 56 123 Helix UNL 1 SULFATE ION (None) VdWContact

Ligand interaction network


SO4_A_101

SO4_A_102

SO4_A_103

SO4_A_104

SO4_B_101

SO4_B_102

SO4_B_103

SO4_C_101

SO4_C_102

SO4_E_101

SO4_F_101

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