Interactions for 5DNF (chain H)
Structure details
- PDB ID: 5DNF open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 2.55 Å
- Date: April 13, 2016
- Reference: 10.1073/PNAS.1523981113 open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
---|---|---|---|---|---|
Ser 4 | 57 | N-term | GLN 48 | C-C motif chemokine 5 (G) | HBAcceptor |
Ser 4 | 57 | N-term | GLN 48 | C-C motif chemokine 5 (G) | VdWContact |
Ser 4 | 57 | N-term | PHE 28 | C-C motif chemokine 5 (I) | VdWContact |
Ser 4 | 57 | N-term | ARG 47 | C-C motif chemokine 5 (G) | VdWContact |
Ser 5 | 58 | N-term | GLN 48 | C-C motif chemokine 5 (G) | VdWContact |
Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (G) | HBDonor |
Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (G) | VdWContact |
Asp 6 | 59 | N-term | GLY 32 | C-C motif chemokine 5 (I) | HBAcceptor |
Asp 6 | 59 | N-term | GLY 32 | C-C motif chemokine 5 (I) | VdWContact |
Asp 6 | 59 | N-term | SER 31 | C-C motif chemokine 5 (I) | HBAcceptor |
Asp 6 | 59 | N-term | SER 31 | C-C motif chemokine 5 (I) | VdWContact |
Thr 7 | 60 | N-term | PRO 9 | C-C motif chemokine 5 (G) | Hydrophobic |
Thr 7 | 60 | N-term | VAL 40 | C-C motif chemokine 5 (G) | Hydrophobic |
Thr 8 | 61 | N-term | PRO 9 | C-C motif chemokine 5 (G) | VdWContact |
Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (G) | Hydrophobic |
Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (G) | VdWContact |
Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (G) | HBAcceptor |
Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (G) | HBDonor |
Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (G) | VdWContact |
Pro 9 | 62 | N-term | THR 7 | C-C motif chemokine 5 (G) | Hydrophobic |
Cys 10 | 63 | CX | PHE 12 | C-C motif chemokine 5 (G) | VdWContact |
Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (G) | HBAcceptor |
Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (G) | HBDonor |
Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (G) | VdWContact |
Cys 10 | 63 | CX | CYS 10 | C-C motif chemokine 5 (G) | Hydrophobic |
Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (G) | Hydrophobic |
Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (G) | VdWContact |
Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (G) | Hydrophobic |
Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (G) | VdWContact |
Ala 13 | 69 | N-loop | SER 4 | C-C motif chemokine 5 (G) | VdWContact |
Lys 33 | 94 | 30s-loop | LYS 33 | C-C motif chemokine 5 (I) | VdWContact |
Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (G) | Hydrophobic |
Val 40 | 102 | B2 | THR 7 | C-C motif chemokine 5 (G) | Hydrophobic |
Arg 47 | 114 | 40s-loop | ASP 6 | C-C motif chemokine 5 (G) | HBDonor |
Arg 47 | 114 | 40s-loop | ASP 6 | C-C motif chemokine 5 (G) | Cationic |
Arg 47 | 114 | 40s-loop | ASP 6 | C-C motif chemokine 5 (G) | VdWContact |
Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (G) | Hydrophobic |
Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (G) | HBAcceptor |
Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (G) | VdWContact |
Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (G) | VdWContact |
Cys 50 | 117 | B3 | SER 5 | C-C motif chemokine 5 (G) | HBDonor |
Cys 50 | 117 | B3 | SER 5 | C-C motif chemokine 5 (G) | VdWContact |