Interactions for 5L2U (chain A)


Structure details

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Chemokine diagram

S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopN-term M K V S A A A L A V I L I A T A L C A P A S A S P Y S S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
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Interactions found in structure

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Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Ser 5 58 N-term CYS 50 C-C motif chemokine 5 (B) HBAcceptor
Ser 5 58 N-term CYS 50 C-C motif chemokine 5 (B) VdWContact
Ser 5 58 N-term ILE 15 C-C motif chemokine 5 (B) VdWContact
Asp 6 59 N-term ARG 47 C-C motif chemokine 5 (B) Anionic
Asp 6 59 N-term GLN 48 C-C motif chemokine 5 (B) VdWContact
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (B) Hydrophobic
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (B) HBDonor
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (B) VdWContact
Thr 7 60 N-term VAL 40 C-C motif chemokine 5 (B) Hydrophobic
Thr 7 60 N-term PRO 9 C-C motif chemokine 5 (B) Hydrophobic
Thr 7 60 N-term CYS 10 C-C motif chemokine 5 (B) VdWContact
Thr 8 61 N-term PHE 12 C-C motif chemokine 5 (B) Hydrophobic
Thr 8 61 N-term PHE 12 C-C motif chemokine 5 (B) VdWContact
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (B) HBAcceptor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (B) HBDonor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (B) VdWContact
Pro 9 62 N-term THR 7 C-C motif chemokine 5 (B) Hydrophobic
Cys 10 63 CX THR 8 C-C motif chemokine 5 (B) HBAcceptor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (B) HBDonor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (B) VdWContact
Phe 12 68 N-loop LYS 33 C-C motif chemokine 5 (B) Hydrophobic
Phe 12 68 N-loop THR 8 C-C motif chemokine 5 (B) Hydrophobic
Ala 13 69 N-loop LYS 33 C-C motif chemokine 5 (C) Hydrophobic
Ile 15 71 N-loop TYR 29 C-C motif chemokine 5 (C) Hydrophobic
Arg 17 73 N-loop ARG 59 C-C motif chemokine 5 (C) VdWContact
Leu 19 75 N-loop TYR 29 C-C motif chemokine 5 (C) Hydrophobic
Ala 22 81 N-loop MET 67 C-C motif chemokine 5 (C) Hydrophobic
Ala 22 81 N-loop MET 67 C-C motif chemokine 5 (C) VdWContact
His 23 82 N-loop ASN 63 C-C motif chemokine 5 (C) Hydrophobic
His 23 82 N-loop ASN 63 C-C motif chemokine 5 (C) HBDonor
His 23 82 N-loop ASN 63 C-C motif chemokine 5 (C) VdWContact
His 23 82 N-loop GLU 66 C-C motif chemokine 5 (C) Hydrophobic
His 23 82 N-loop MET 67 C-C motif chemokine 5 (C) Hydrophobic
His 23 82 N-loop ILE 62 C-C motif chemokine 5 (C) Hydrophobic
Tyr 29 88 B1 GLU 66 C-C motif chemokine 5 (G) Hydrophobic
Tyr 29 88 B1 GLU 66 C-C motif chemokine 5 (G) VdWContact
Tyr 29 88 B1 MET 67 C-C motif chemokine 5 (G) Hydrophobic
Tyr 29 88 B1 MET 67 C-C motif chemokine 5 (G) VdWContact
Tyr 29 88 B1 ILE 62 C-C motif chemokine 5 (G) Hydrophobic
Thr 30 89 B1 MET 67 C-C motif chemokine 5 (G) VdWContact
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (B) Hydrophobic
Pro 37 99 30s-loop MET 67 C-C motif chemokine 5 (G) Hydrophobic
Ala 38 100 30s-loop MET 67 C-C motif chemokine 5 (G) VdWContact
Val 40 102 B2 THR 7 C-C motif chemokine 5 (B) Hydrophobic
Thr 43 105 B2 GLU 66 C-C motif chemokine 5 (C) HBDonor
Thr 43 105 B2 GLU 66 C-C motif chemokine 5 (C) VdWContact
Arg 44 106 40s-loop MET 67 C-C motif chemokine 5 (C) VdWContact
Lys 45 112 40s-loop SER 68 C-C motif chemokine 5 (C) HBDonor
Lys 45 112 40s-loop SER 68 C-C motif chemokine 5 (C) VdWContact
Lys 45 112 40s-loop GLU 66 C-C motif chemokine 5 (C) HBDonor
Lys 45 112 40s-loop GLU 66 C-C motif chemokine 5 (C) VdWContact
Arg 47 114 40s-loop SER 4 C-C motif chemokine 5 (B) VdWContact
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (C) Cationic
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (C) VdWContact
Arg 47 114 40s-loop TYR 27 C-C motif chemokine 5 (C) Hydrophobic
Arg 47 114 40s-loop TYR 27 C-C motif chemokine 5 (C) HBDonor
Arg 47 114 40s-loop TYR 27 C-C motif chemokine 5 (C) VdWContact
Gln 48 115 B3 SER 4 C-C motif chemokine 5 (B) HBDonor
Gln 48 115 B3 SER 4 C-C motif chemokine 5 (B) VdWContact
Gln 48 115 B3 ASP 6 C-C motif chemokine 5 (B) HBAcceptor
Gln 48 115 B3 ASP 6 C-C motif chemokine 5 (B) VdWContact
Val 49 116 B3 TYR 29 C-C motif chemokine 5 (C) Hydrophobic
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (B) Hydrophobic
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (B) HBDonor
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (B) VdWContact
Pro 53 120 50s-loop ASN 63 C-C motif chemokine 5 (G) HBAcceptor
Pro 53 120 50s-loop ASN 63 C-C motif chemokine 5 (G) VdWContact
Pro 53 120 50s-loop MET 67 C-C motif chemokine 5 (G) Hydrophobic
Glu 54 121 50s-loop ARG 59 C-C motif chemokine 5 (G) VdWContact
Arg 59 126 Helix TYR 29 C-C motif chemokine 5 (G) HBDonor
Arg 59 126 Helix TYR 29 C-C motif chemokine 5 (G) VdWContact
Arg 59 126 Helix ILE 62 C-C motif chemokine 5 (G) VdWContact
Arg 59 126 Helix ARG 59 C-C motif chemokine 5 (G) Hydrophobic
Arg 59 126 Helix ARG 59 C-C motif chemokine 5 (G) VdWContact
Arg 59 126 Helix ASN 63 C-C motif chemokine 5 (G) VdWContact
Ile 62 129 Helix TYR 29 C-C motif chemokine 5 (G) Hydrophobic
Asn 63 130 Helix PRO 53 C-C motif chemokine 5 (G) HBDonor
Asn 63 130 Helix PRO 53 C-C motif chemokine 5 (G) VdWContact
Glu 66 133 Helix TYR 29 C-C motif chemokine 5 (G) Hydrophobic
Glu 66 133 Helix TYR 29 C-C motif chemokine 5 (G) VdWContact
Met 67 134 Helix ALA 38 C-C motif chemokine 5 (G) VdWContact
Met 67 134 Helix TYR 29 C-C motif chemokine 5 (G) Hydrophobic
Met 67 134 Helix TYR 29 C-C motif chemokine 5 (G) VdWContact
Met 67 134 Helix PRO 53 C-C motif chemokine 5 (G) Hydrophobic
Met 67 134 Helix PRO 37 C-C motif chemokine 5 (G) Hydrophobic

Ligand interaction network

EPE_A_101

CL_A_102

GOL_A_103

GOL_A_104

EPE_F_101

CL_F_102

EPE_G_101

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