Interactions for 5L2U (chain H)
Structure details
- PDB ID: 5L2U open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 2.28 Å
- Date: Aug. 9, 2017
- Reference: open_in_new
- State: oligomer
Chemokine diagram
Pick color:
, 'snake_.png', {scale: 3});){kind=link}
, 'snake_.jpg', {scale: 3});){kind=link}
Interactions found in structure
Download list in excel
| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Ser 5 | 58 | N-term | GLN 48 | C-C motif chemokine 5 (G) | VdWContact |
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (G) | HBDonor |
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (G) | VdWContact |
| Asp 6 | 59 | N-term | CYS 50 | C-C motif chemokine 5 (G) | HBAcceptor |
| Asp 6 | 59 | N-term | CYS 50 | C-C motif chemokine 5 (G) | VdWContact |
| Thr 7 | 60 | N-term | VAL 40 | C-C motif chemokine 5 (G) | Hydrophobic |
| Thr 7 | 60 | N-term | PRO 9 | C-C motif chemokine 5 (G) | Hydrophobic |
| Thr 7 | 60 | N-term | GLN 48 | C-C motif chemokine 5 (G) | Hydrophobic |
| Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (G) | Hydrophobic |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (G) | HBAcceptor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (G) | HBDonor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (G) | VdWContact |
| Pro 9 | 62 | N-term | THR 7 | C-C motif chemokine 5 (G) | Hydrophobic |
| Cys 10 | 63 | CX | THR 7 | C-C motif chemokine 5 (G) | VdWContact |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (G) | HBAcceptor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (G) | HBDonor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (G) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (G) | Hydrophobic |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (G) | Hydrophobic |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (G) | VdWContact |
| Tyr 27 | 86 | B1 | SER 4 | C-C motif chemokine 5 (I) | HBAcceptor |
| Tyr 27 | 86 | B1 | SER 4 | C-C motif chemokine 5 (I) | VdWContact |
| Phe 28 | 87 | B1 | SER 4 | C-C motif chemokine 5 (I) | VdWContact |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (G) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (G) | VdWContact |
| Lys 33 | 94 | 30s-loop | LYS 33 | C-C motif chemokine 5 (I) | Hydrophobic |
| Val 40 | 102 | B2 | THR 7 | C-C motif chemokine 5 (G) | Hydrophobic |
| Arg 47 | 114 | 40s-loop | ASP 6 | C-C motif chemokine 5 (G) | Cationic |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (G) | VdWContact |
| Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (G) | Hydrophobic |
| Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (G) | HBAcceptor |
| Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (G) | VdWContact |
| Cys 50 | 117 | B3 | SER 5 | C-C motif chemokine 5 (G) | HBDonor |
| Cys 50 | 117 | B3 | SER 5 | C-C motif chemokine 5 (G) | VdWContact |
Ligand interaction network
EPE_A_101
CL_A_102
GOL_A_103
GOL_A_104
EPE_F_101
CL_F_102
EPE_G_101
Interaction pattern search
Search complexes with similar interaction patterns:
