Interactions for 5WB2 (chain B)


Structure details

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Chemokine diagram

Q A S C G K R A 30s-loop R Q H R 40s-loop D P K E 50s-loopN-term M A P I S L S W L L R L A T F C H L T V L L A G Q H H G V T K C N I T C S K M T S K I P V A L N-termC-term A A A L T R N G G T F E K Q I G E V K P R T T P A A G G M D E S V V L E P E A T G E S S S L E P T P S S Q E A Q R A L G T S P E L P T G V T G S S G T R L P P T P K A Q D G G P V G T E L F R V P P V S T A A T W Q S S A P H Q P G P S L W A E A K T S E A P S T Q D P S T Q A S T A S S P A P E E N A P S E G Q R V W G Q G Q S P R P E N S L E R E E M G P V P A H T D A F Q D W G P G S M A H V S V V P V S S E G T P S R E P V A S G S W T P K A E E P I H A T M D P Q R L G V L I T P V P D A Q A A T R R Q A V G L L A F L G L L F C L G V A M F T Y Q S L Q G C P R K M A G E M A E G L R Y I P R S C G S N S Y V L V P V C-term N Q Q Y H I L I I L E T A C F L Q W V K D A M Q H L D R Q
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Interactions found in structure

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Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Met 1 32 N-term TYR 40 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Met 1 32 N-term TYR 40 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Met 1 32 N-term PHE 111 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ala 2 33 N-term GLU 277 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ala 2 33 N-term GLU 277 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ala 2 33 N-term PHE 281 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ala 2 33 N-term PHE 281 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ala 2 33 N-term TYR 244 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ala 2 33 N-term TYR 244 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ala 2 33 N-term LEU 192 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ala 2 33 N-term MET 115 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ala 2 33 N-term PHE 111 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ala 2 33 N-term PHE 111 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Pro 3 34 N-term TYR 112 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Pro 3 34 N-term TYR 244 Envelope protein US28, nanobody 7 fusion protein (A) HBAcceptor
Pro 3 34 N-term TYR 244 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Pro 3 34 N-term LEU 192 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Gly 4 59 N-term LEU 248 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Gly 4 59 N-term ASN 189 Envelope protein US28, nanobody 7 fusion protein (A) HBAcceptor
Gly 4 59 N-term ASN 189 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Gly 4 59 N-term LEU 273 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Gly 4 59 N-term LEU 273 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Gly 4 59 N-term LEU 255 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Gly 4 59 N-term LEU 255 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Val 5 60 N-term GLU 277 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Val 5 60 N-term GLU 277 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Val 5 60 N-term LEU 273 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Thr 6 61 N-term LYS 270 Envelope protein US28, nanobody 7 fusion protein (A) HBAcceptor
Thr 6 61 N-term LYS 270 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Thr 6 61 N-term MET 174 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Lys 7 62 N-term ILE 274 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Lys 7 62 N-term LEU 93 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Lys 7 62 N-term LEU 29 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Lys 7 62 N-term LEU 29 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Lys 7 62 N-term THR 36 Envelope protein US28, nanobody 7 fusion protein (A) HBDonor
Lys 7 62 N-term THR 36 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Lys 7 62 N-term LYS 33 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Lys 7 62 N-term LYS 33 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Cys 8 63 CX PHE 25 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Cys 8 63 CX LYS 270 Envelope protein US28, nanobody 7 fusion protein (A) Anionic
Cys 8 63 CX LYS 270 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Asn 9 64 CX PHE 25 Envelope protein US28, nanobody 7 fusion protein (A) HBAcceptor
Asn 9 64 CX PHE 25 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ile 10 65 CX PRO 22 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Ile 10 65 CX VAL 24 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Thr 11 66 CX CYS 23 Envelope protein US28, nanobody 7 fusion protein (A) HBAcceptor
Thr 11 66 CX CYS 23 Envelope protein US28, nanobody 7 fusion protein (A) HBDonor
Thr 11 66 CX CYS 23 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Thr 11 66 CX PHE 25 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Thr 11 66 CX PHE 25 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ser 13 68 N-loop ALA 20 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Asn 30 89 B1 ASP 170 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Gln 31 90 30s-loop ASP 170 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Ser 33 94 30s-loop MET 174 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Cys 34 95 30s-loop TYR 177 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Cys 34 95 30s-loop MET 174 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Cys 34 95 30s-loop MET 174 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Cys 34 95 30s-loop LYS 270 Envelope protein US28, nanobody 7 fusion protein (A) Anionic
Cys 34 95 30s-loop LYS 270 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Lys 36 97 30s-loop ASP 178 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Arg 37 99 30s-loop ASP 178 Envelope protein US28, nanobody 7 fusion protein (A) HBDonor
Arg 37 99 30s-loop ASP 178 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Gln 45 112 40s-loop ASP 17 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Arg 47 114 40s-loop ASP 17 Envelope protein US28, nanobody 7 fusion protein (A) Cationic
Arg 47 114 40s-loop ASP 17 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Arg 47 114 40s-loop GLU 18 Envelope protein US28, nanobody 7 fusion protein (A) Cationic
Leu 48 115 B3 THR 21 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Leu 48 115 B3 PRO 22 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Phe 49 116 B3 THR 21 Envelope protein US28, nanobody 7 fusion protein (A) Hydrophobic
Phe 49 116 B3 ASP 19 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact
Phe 49 116 B3 GLU 18 Envelope protein US28, nanobody 7 fusion protein (A) VdWContact

Ligand interaction network

CLR_A_1201

CLR_A_1202

OLC_A_1203

OLC_A_1204

OLC_A_1205

OLC_A_1206

MES_B_102

PCA_D_1

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