Interactions for 6C6D (chain E)


Structure details

3D view

NGL is a WebGL based 3D viewer powered by MMTF.



Chemokine diagram

S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopN-term M K V S A A A L A V I L I A T A L C A P A S A S P Y S S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
Pick color:
 
 
 
 
 
 
 
 
 
 
 
 


Interactions found in structure

Download list in excel
Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Ser 5 58 N-term GLN 48 C-C motif chemokine 5 (F) VdWContact
Asp 6 59 N-term CYS 50 C-C motif chemokine 5 (F) VdWContact
Asp 6 59 N-term GLN 48 C-C motif chemokine 5 (F) HBDonor
Asp 6 59 N-term GLN 48 C-C motif chemokine 5 (F) VdWContact
Thr 7 60 N-term PRO 9 C-C motif chemokine 5 (F) Hydrophobic
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (F) HBDonor
Thr 7 60 N-term GLN 48 C-C motif chemokine 5 (F) VdWContact
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (F) HBAcceptor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (F) HBDonor
Thr 8 61 N-term CYS 10 C-C motif chemokine 5 (F) VdWContact
Thr 8 61 N-term PHE 12 C-C motif chemokine 5 (F) Hydrophobic
Thr 8 61 N-term PHE 12 C-C motif chemokine 5 (F) VdWContact
Pro 9 62 N-term PRO 9 C-C motif chemokine 5 (F) VdWContact
Cys 10 63 CX THR 7 C-C motif chemokine 5 (F) HBAcceptor
Cys 10 63 CX THR 7 C-C motif chemokine 5 (F) VdWContact
Cys 10 63 CX THR 8 C-C motif chemokine 5 (F) HBAcceptor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (F) HBDonor
Cys 10 63 CX THR 8 C-C motif chemokine 5 (F) VdWContact
Phe 12 68 N-loop CYS 34 C-C motif chemokine 5 (F) Hydrophobic
Phe 12 68 N-loop THR 8 C-C motif chemokine 5 (F) Hydrophobic
Phe 12 68 N-loop THR 8 C-C motif chemokine 5 (F) VdWContact
Phe 12 68 N-loop LYS 33 C-C motif chemokine 5 (F) Hydrophobic
Phe 12 68 N-loop LYS 33 C-C motif chemokine 5 (F) VdWContact
Ala 13 69 N-loop LYS 33 C-C motif chemokine 5 (G) Hydrophobic
Ala 13 69 N-loop LYS 33 C-C motif chemokine 5 (G) VdWContact
Ala 13 69 N-loop GLY 32 C-C motif chemokine 5 (G) VdWContact
Ile 15 71 N-loop TYR 29 C-C motif chemokine 5 (G) Hydrophobic
Ala 16 72 N-loop PRO 37 C-C motif chemokine 5 (G) Hydrophobic
Arg 17 73 N-loop GLU 54 C-C motif chemokine 5 (G) Cationic
Leu 19 75 N-loop TYR 29 C-C motif chemokine 5 (G) Hydrophobic
Leu 19 75 N-loop TYR 29 C-C motif chemokine 5 (G) VdWContact
His 23 82 N-loop GLU 66 C-C motif chemokine 5 (G) Hydrophobic
His 23 82 N-loop GLU 66 C-C motif chemokine 5 (G) VdWContact
His 23 82 N-loop ILE 62 C-C motif chemokine 5 (G) Hydrophobic
His 23 82 N-loop ILE 62 C-C motif chemokine 5 (G) VdWContact
His 23 82 N-loop ASN 63 C-C motif chemokine 5 (G) VdWContact
Glu 26 85 B1 ARG 47 C-C motif chemokine 5 (C) VdWContact
Phe 28 87 B1 ARG 47 C-C motif chemokine 5 (C) Hydrophobic
Tyr 29 88 B1 LEU 19 C-C motif chemokine 5 (C) Hydrophobic
Tyr 29 88 B1 ILE 15 C-C motif chemokine 5 (C) Hydrophobic
Tyr 29 88 B1 VAL 49 C-C motif chemokine 5 (C) Hydrophobic
Gly 32 91 30s-loop TYR 14 C-C motif chemokine 5 (C) VdWContact
Gly 32 91 30s-loop ALA 13 C-C motif chemokine 5 (C) VdWContact
Lys 33 94 30s-loop ALA 13 C-C motif chemokine 5 (C) Hydrophobic
Lys 33 94 30s-loop ALA 13 C-C motif chemokine 5 (C) VdWContact
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (F) Hydrophobic
Lys 33 94 30s-loop PHE 12 C-C motif chemokine 5 (F) VdWContact
Pro 37 99 30s-loop ALA 16 C-C motif chemokine 5 (C) Hydrophobic
Thr 43 105 B2 GLU 66 C-C motif chemokine 5 (G) HBDonor
Thr 43 105 B2 GLU 66 C-C motif chemokine 5 (G) VdWContact
Arg 44 106 40s-loop GLU 66 C-C motif chemokine 5 (G) HBDonor
Arg 44 106 40s-loop GLU 66 C-C motif chemokine 5 (G) Cationic
Arg 44 106 40s-loop GLU 66 C-C motif chemokine 5 (G) VdWContact
Arg 44 106 40s-loop SER 68 C-C motif chemokine 5 (G) VdWContact
Arg 44 106 40s-loop LEU 65 C-C motif chemokine 5 (G) VdWContact
Lys 45 112 40s-loop LEU 65 C-C motif chemokine 5 (G) HBDonor
Lys 45 112 40s-loop LEU 65 C-C motif chemokine 5 (G) VdWContact
Lys 45 112 40s-loop TYR 27 C-C motif chemokine 5 (G) Hydrophobic
Lys 45 112 40s-loop TYR 27 C-C motif chemokine 5 (G) VdWContact
Lys 45 112 40s-loop GLU 66 C-C motif chemokine 5 (G) Cationic
Lys 45 112 40s-loop GLU 66 C-C motif chemokine 5 (G) VdWContact
Arg 47 114 40s-loop PHE 28 C-C motif chemokine 5 (G) Hydrophobic
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (G) HBDonor
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (G) Cationic
Arg 47 114 40s-loop GLU 26 C-C motif chemokine 5 (G) VdWContact
Gln 48 115 B3 THR 7 C-C motif chemokine 5 (F) Hydrophobic
Gln 48 115 B3 ASP 6 C-C motif chemokine 5 (F) VdWContact
Cys 50 117 B3 ASP 6 C-C motif chemokine 5 (F) VdWContact
Glu 54 121 50s-loop ARG 17 C-C motif chemokine 5 (C) Anionic
Ile 62 129 Helix HIS 23 C-C motif chemokine 5 (C) Hydrophobic
Ile 62 129 Helix HIS 23 C-C motif chemokine 5 (C) VdWContact
Asn 63 130 Helix HIS 23 C-C motif chemokine 5 (C) Hydrophobic
Asn 63 130 Helix HIS 23 C-C motif chemokine 5 (C) VdWContact
Leu 65 132 Helix LYS 45 C-C motif chemokine 5 (C) HBAcceptor
Leu 65 132 Helix LYS 45 C-C motif chemokine 5 (C) VdWContact
Glu 66 133 Helix ARG 44 C-C motif chemokine 5 (C) Hydrophobic
Glu 66 133 Helix ARG 44 C-C motif chemokine 5 (C) VdWContact
Glu 66 133 Helix HIS 23 C-C motif chemokine 5 (C) Hydrophobic
Glu 66 133 Helix HIS 23 C-C motif chemokine 5 (C) VdWContact
Glu 66 133 Helix LYS 45 C-C motif chemokine 5 (C) Hydrophobic
Glu 66 133 Helix LYS 45 C-C motif chemokine 5 (C) HBAcceptor
Glu 66 133 Helix LYS 45 C-C motif chemokine 5 (C) VdWContact
Glu 66 133 Helix THR 43 C-C motif chemokine 5 (C) VdWContact
Met 67 134 Helix ALA 22 C-C motif chemokine 5 (C) Hydrophobic
Met 67 134 Helix ALA 22 C-C motif chemokine 5 (C) VdWContact
Ser 68 135 Helix LYS 45 C-C motif chemokine 5 (C) VdWContact

Interaction pattern search
Search complexes with similar interaction patterns:

Specify the minimum similarity (0.00 no similarity, 1.00 identical)