Interactions for 6C6D (chain I)
Structure details
- PDB ID: 6C6D open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 5.5 Å
- Date: Jan. 23, 2019
- Reference: open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (J) | HBDonor |
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (J) | VdWContact |
| Asp 6 | 59 | N-term | CYS 50 | C-C motif chemokine 5 (J) | VdWContact |
| Asp 6 | 59 | N-term | TYR 29 | C-C motif chemokine 5 (H) | VdWContact |
| Asp 6 | 59 | N-term | THR 30 | C-C motif chemokine 5 (H) | VdWContact |
| Thr 7 | 60 | N-term | CYS 10 | C-C motif chemokine 5 (J) | VdWContact |
| Thr 7 | 60 | N-term | GLN 48 | C-C motif chemokine 5 (J) | VdWContact |
| Thr 7 | 60 | N-term | PRO 9 | C-C motif chemokine 5 (J) | Hydrophobic |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (J) | HBAcceptor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (J) | HBDonor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (J) | VdWContact |
| Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (J) | VdWContact |
| Pro 9 | 62 | N-term | PRO 9 | C-C motif chemokine 5 (J) | Hydrophobic |
| Pro 9 | 62 | N-term | PRO 9 | C-C motif chemokine 5 (J) | VdWContact |
| Pro 9 | 62 | N-term | THR 7 | C-C motif chemokine 5 (J) | Hydrophobic |
| Pro 9 | 62 | N-term | THR 7 | C-C motif chemokine 5 (J) | VdWContact |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (J) | HBAcceptor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (J) | HBDonor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (J) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (J) | Hydrophobic |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (J) | VdWContact |
| Ala 13 | 69 | N-loop | LYS 33 | C-C motif chemokine 5 (K) | Hydrophobic |
| Arg 17 | 73 | N-loop | GLU 54 | C-C motif chemokine 5 (K) | Cationic |
| Arg 17 | 73 | N-loop | GLU 54 | C-C motif chemokine 5 (K) | VdWContact |
| Arg 17 | 73 | N-loop | ARG 59 | C-C motif chemokine 5 (K) | VdWContact |
| Leu 19 | 75 | N-loop | TYR 29 | C-C motif chemokine 5 (K) | Hydrophobic |
| Leu 19 | 75 | N-loop | TYR 29 | C-C motif chemokine 5 (K) | VdWContact |
| His 23 | 82 | N-loop | ASN 63 | C-C motif chemokine 5 (K) | Hydrophobic |
| His 23 | 82 | N-loop | ASN 63 | C-C motif chemokine 5 (K) | VdWContact |
| His 23 | 82 | N-loop | GLU 66 | C-C motif chemokine 5 (K) | Hydrophobic |
| His 23 | 82 | N-loop | GLU 66 | C-C motif chemokine 5 (K) | VdWContact |
| His 23 | 82 | N-loop | ILE 62 | C-C motif chemokine 5 (K) | Hydrophobic |
| His 23 | 82 | N-loop | ILE 62 | C-C motif chemokine 5 (K) | VdWContact |
| Glu 26 | 85 | B1 | ARG 47 | C-C motif chemokine 5 (G) | Anionic |
| Glu 26 | 85 | B1 | ARG 47 | C-C motif chemokine 5 (G) | VdWContact |
| Tyr 27 | 86 | B1 | LYS 45 | C-C motif chemokine 5 (G) | Hydrophobic |
| Tyr 27 | 86 | B1 | ARG 47 | C-C motif chemokine 5 (G) | VdWContact |
| Phe 28 | 87 | B1 | ARG 47 | C-C motif chemokine 5 (G) | VdWContact |
| Tyr 29 | 88 | B1 | LEU 19 | C-C motif chemokine 5 (G) | Hydrophobic |
| Tyr 29 | 88 | B1 | LEU 19 | C-C motif chemokine 5 (G) | VdWContact |
| Tyr 29 | 88 | B1 | VAL 49 | C-C motif chemokine 5 (G) | Hydrophobic |
| Gly 32 | 91 | 30s-loop | ALA 13 | C-C motif chemokine 5 (G) | VdWContact |
| Lys 33 | 94 | 30s-loop | ALA 13 | C-C motif chemokine 5 (G) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | ALA 13 | C-C motif chemokine 5 (G) | VdWContact |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (J) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (J) | VdWContact |
| Lys 33 | 94 | 30s-loop | LYS 33 | C-C motif chemokine 5 (H) | VdWContact |
| Ser 35 | 96 | 30s-loop | SER 35 | C-C motif chemokine 5 (J) | VdWContact |
| Thr 43 | 105 | B2 | GLU 66 | C-C motif chemokine 5 (K) | VdWContact |
| Arg 44 | 106 | 40s-loop | GLU 66 | C-C motif chemokine 5 (K) | Hydrophobic |
| Arg 44 | 106 | 40s-loop | GLU 66 | C-C motif chemokine 5 (K) | VdWContact |
| Lys 45 | 112 | 40s-loop | GLU 66 | C-C motif chemokine 5 (K) | Hydrophobic |
| Lys 45 | 112 | 40s-loop | GLU 66 | C-C motif chemokine 5 (K) | HBDonor |
| Lys 45 | 112 | 40s-loop | GLU 66 | C-C motif chemokine 5 (K) | VdWContact |
| Arg 47 | 114 | 40s-loop | PHE 28 | C-C motif chemokine 5 (K) | Hydrophobic |
| Arg 47 | 114 | 40s-loop | GLU 26 | C-C motif chemokine 5 (K) | Cationic |
| Arg 47 | 114 | 40s-loop | GLU 26 | C-C motif chemokine 5 (K) | VdWContact |
| Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (J) | VdWContact |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (J) | VdWContact |
| Val 49 | 116 | B3 | TYR 29 | C-C motif chemokine 5 (K) | Hydrophobic |
| Arg 59 | 126 | Helix | ARG 17 | C-C motif chemokine 5 (G) | VdWContact |
| Ile 62 | 129 | Helix | HIS 23 | C-C motif chemokine 5 (G) | Hydrophobic |
| Ile 62 | 129 | Helix | HIS 23 | C-C motif chemokine 5 (G) | VdWContact |
| Asn 63 | 130 | Helix | HIS 23 | C-C motif chemokine 5 (G) | Hydrophobic |
| Asn 63 | 130 | Helix | HIS 23 | C-C motif chemokine 5 (G) | VdWContact |
| Glu 66 | 133 | Helix | ARG 44 | C-C motif chemokine 5 (G) | Hydrophobic |
| Glu 66 | 133 | Helix | ARG 44 | C-C motif chemokine 5 (G) | HBAcceptor |
| Glu 66 | 133 | Helix | ARG 44 | C-C motif chemokine 5 (G) | VdWContact |
| Glu 66 | 133 | Helix | HIS 23 | C-C motif chemokine 5 (G) | VdWContact |
| Glu 66 | 133 | Helix | THR 43 | C-C motif chemokine 5 (G) | VdWContact |
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